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Romain Koszul Laboratory

19 followers
Institut Pasteur, Paris
https://research.pasteur.fr/en/team/spatial-regulation-of-genomes/

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instaGRAALinstaGRAALPublic
Large genome reassembly based on Hi-C data, continuation of GRAAL
Python 44 10
metaTORmetaTORPublic
Metagenomic binning based on Hi-C data
Python 30 10
hicstuffhicstuffPublic
Forked from baudrly/hicstuff
Simple library/pipeline to generate and handle Hi-C data.
Python 42 9
chromosightchromosightPublic
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
Python 70 11
serpentineserpentinePublic
Local, normalization-free contact map binning
Python 5 4

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Showing 10 of 19 repositories

hicberg Public Forked from sebgra/hicberg
Python package to reconstruct genomic signals coming from repeated elements in paired-end data like Hi-C, MicroC.
koszullab/hicberg's past year of commit activity
Python 0 2 0 0 Updated Jul 21, 2026
chromosight Public
Computer vision based program for pattern recognition in chromosome (Hi-C) contact maps
koszullab/chromosight's past year of commit activity
Python 70 11 2 0 Updated Jul 7, 2026
hicstuff Public Forked from baudrly/hicstuff
Simple library/pipeline to generate and handle Hi-C data.
koszullab/hicstuff's past year of commit activity
Python 42BSD-3-Clause 11 2 0 Updated May 18, 2026
instaGRAAL Public
Large genome reassembly based on Hi-C data, continuation of GRAAL
koszullab/instaGRAAL's past year of commit activity
Python 44GPL-3.0 10 9 0 Updated Apr 27, 2026
metaTOR Public
Metagenomic binning based on Hi-C data
koszullab/metaTOR's past year of commit activity
Python 30GPL-3.0 10 6 1 Updated Aug 7, 2025
HiContacts Public Forked from js2264/HiContacts
HiContacts: R interface to cool files and analysis of Hi-C contacts
koszullab/HiContacts's past year of commit activity
R 1 3 0 0 Updated Jan 27, 2024
chromosight_analyses_scripts Public
Codes used to perform analyses in the Chromosight publication
koszullab/chromosight_analyses_scripts's past year of commit activity
Python 4 0 0 0 Updated Nov 17, 2023
transcription_T7_analysis Public Forked from ABignaud/transcription_T7_analysis
In this repository, we present the code for the analysis of study of the transcription's impact on Escherichia coli chromosome.
koszullab/transcription_T7_analysis's past year of commit activity
Python 0BSD-3-Clause 1 0 0 Updated Oct 1, 2023
bacchus Public Forked from ABignaud/bacchus
Tools for analysis of BACterial Chromosome HiC data. (BACCHUS)
koszullab/bacchus's past year of commit activity
Python 0BSD-3-Clause 2 0 0 Updated Sep 4, 2023
GRAAL Public
(check out instaGRAAL for a faster, updated program!) This program is from Marie-Nelly et al., Nature Communications, 2014 (High-quality genome assembly using chromosomal contact data), also Marie-Nelly et al., 2013, PhD thesis (https://www.theses.fr/2013PA066714)
koszullab/GRAAL's past year of commit activity
Python 15 9 8 4 Updated Nov 22, 2022

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