For users of the luna cluster at MSKCC CMO

Add this to your ~/.profile to get access to the cmo_* and cmoflow_* tools:

# Set PATH to include MSKCC's bin of tools, if foundif [ -d"/opt/common/CentOS_6-dev/bin/current" ];then
PATH="/opt/common/CentOS_6-dev/bin/current:$PATH"fi# Set PATH to include MSKCC's bin of python tools, if foundif [ -d"/opt/common/CentOS_6-dev/python/python-2.7.10/bin" ];then
PATH="/opt/common/CentOS_6-dev/python/python-2.7.10/bin:$PATH"fi

Documentation lives here, and running workflows can be tracked here.

For external users

Here is how to install these tools without sudo rights:

curl -LO https://github.com/mskcc/cmo/archive/master.zip
unzip master.zip
cd cmo-master
python setup.py install --user

Add this to your ~/.profile to get access to the cmo_* and cmoflow_* tools:

# Set PATH to include local python bin if foundif [ -d"$HOME/.local/bin" ];then
PATH="$HOME/.local/bin:$PATH"fi

For all other users