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Merge pull request #847 from openvar/transcript_map_data_bug Fix a bug identified in batch processing - #849

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Peter-J-Freeman merged 5 commits into
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Jun 26, 2026
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Merge pull request #847 from openvar/transcript_map_data_bug Fix a bug identified in batch processing#849
Peter-J-Freeman merged 5 commits into
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@Peter-J-Freeman

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Thought. Is batch list added to to the Validator object
causing race conditions. Difficult to test, but we can
move batch_lisy to local scope anyway.
Bug identified in batch testing, but unable to replicate. a KeyError is
returned. KeyError: 'alt_strand'
Add retries to periodically and rarely failing code to attempt retries
to fetch the data before raising, which includes logging and testing.
bug: Make batch_list local not global
Fix a bug identified in batch processing
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codecov Bot commented Jun 26, 2026

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Codecov Report

❌ Patch coverage is 97.56098% with 1 line in your changes missing coverage. Please review.
✅ Project coverage is 76.35%. Comparing base (c561106) to head (536fc28).
⚠️ Report is 29 commits behind head on master.

Files with missing lines Patch % Lines
VariantValidator/modules/format_converters.py 93.33% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #849      +/-   ##
==========================================
+ Coverage   76.15%   76.35%   +0.20%     
==========================================
  Files          37       37              
  Lines       13059    13071      +12     
==========================================
+ Hits         9945     9981      +36     
+ Misses       3114     3090      -24     

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@Peter-J-Freeman
Peter-J-Freeman merged commit dfd112c into master Jun 26, 2026
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