[Fix] Include *_i.h5 files in get_cache_files()

[jan-janssen]

Summary by CodeRabbit

• Bug Fixes
  • Enhanced cache discovery to include both input and output cached artifacts, providing more complete cache file access.

[coderabbitai]

📝 Walkthrough

Walkthrough

The get_cache_files function in the HDF5 cache module is updated to discover both input and output cache files. The file discovery filter now matches both *_i.h5 and *_o.h5 filenames instead of only output files, expanding the cache inventory.

Changes

Cache File Discovery

Layer / File(s)	Summary
Cache file discovery filter update src/executorlib/standalone/hdf.py	The file matching logic in get_cache_files is expanded to include both *_i.h5 input cache and *_o.h5 output cache files when walking the cache directory.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

• pyiron/executorlib#681: Introduces the naming and layout convention for input (*_i.h5) and output (*_o.h5) cache files that this PR now discovers.

Poem

🐰 Behold! The cache files, both old and new,
Input and output, a unified view,
No longer overlooked, the data flows true,
With *_i.h5 and *_o.h5 in sight,
The discovery filter shines ever bright! ✨

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and specifically describes the main change: including *_i.h5 files in the get_cache_files() function, which matches the file-level summary of discovering both output and input cache files.
Docstring Coverage	✅ Passed	Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch cache_running

---

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❤️ Share

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_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.19%. Comparing base (56da026) to head (5c422bb).

Additional details and impacted files

@@ Coverage Diff @@## main #1004 +/- ##
=======================================
Coverage 94.19% 94.19% =======================================
Files 39 39 Lines 2103 2103 =======================================
Hits 1981 1981 Misses 122 122 

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[coderabbitai]

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)

src/executorlib/standalone/hdf.py (1)

165-171: ⚠️ Potential issue | 🟡 Minor | ⚡ Quick win

Update get_cache_files docstring to match new behavior.

The docstring still states this returns files “which contain outputs,” but the implementation now includes both *_o.h5 and *_i.h5. Please update the wording to avoid contract drift.

🤖 Prompt for AI Agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
In `@src/executorlib/standalone/hdf.py` around lines 165 - 171, Update the
get_cache_files docstring to reflect the current behavior: state that it
recursively searches cache_directory for HDF5 cache files matching both output
and input patterns (e.g., *_o.h5 and *_i.h5) and returns a list of those files,
rather than saying it returns only files "which contain outputs"; reference the
get_cache_files function name and mention the *_o.h5 and *_i.h5 patterns so the
docstring matches the implementation.

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Outside diff comments:
In `@src/executorlib/standalone/hdf.py`:
- Around line 165-171: Update the get_cache_files docstring to reflect the
current behavior: state that it recursively searches cache_directory for HDF5
cache files matching both output and input patterns (e.g., *_o.h5 and *_i.h5)
and returns a list of those files, rather than saying it returns only files
"which contain outputs"; reference the get_cache_files function name and mention
the *_o.h5 and *_i.h5 patterns so the docstring matches the implementation.

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 8a3b7d32-c97c-49b2-b1eb-e719e72d7acc

📥 Commits

Reviewing files that changed from the base of the PR and between 56da026 and 5c422bb.

📒 Files selected for processing (1)

• src/executorlib/standalone/hdf.py

[jan-janssen]

Summary by CodeRabbit

• Bug Fixes
  • Enhanced cache discovery to include both input and output cached artifacts, providing more complete cache file access.

[coderabbitai]

📝 Walkthrough

Walkthrough

The get_cache_files function in the HDF5 cache module is updated to discover both input and output cache files. The file discovery filter now matches both *_i.h5 and *_o.h5 filenames instead of only output files, expanding the cache inventory.

Changes

Cache File Discovery

Layer / File(s)	Summary
Cache file discovery filter update src/executorlib/standalone/hdf.py	The file matching logic in get_cache_files is expanded to include both *_i.h5 input cache and *_o.h5 output cache files when walking the cache directory.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

• pyiron/executorlib#681: Introduces the naming and layout convention for input (*_i.h5) and output (*_o.h5) cache files that this PR now discovers.

Poem

🐰 Behold! The cache files, both old and new,
Input and output, a unified view,
No longer overlooked, the data flows true,
With *_i.h5 and *_o.h5 in sight,
The discovery filter shines ever bright! ✨

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and specifically describes the main change: including *_i.h5 files in the get_cache_files() function, which matches the file-level summary of discovering both output and input cache files.
Docstring Coverage	✅ Passed	Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch cache_running

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.19%. Comparing base (56da026) to head (5c422bb).

Additional details and impacted files

@@ Coverage Diff @@## main #1004 +/- ##
=======================================
Coverage 94.19% 94.19% =======================================
Files 39 39 Lines 2103 2103 =======================================
Hits 1981 1981 Misses 122 122 

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[coderabbitai]

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)

src/executorlib/standalone/hdf.py (1)

165-171: ⚠️ Potential issue | 🟡 Minor | ⚡ Quick win

Update get_cache_files docstring to match new behavior.

The docstring still states this returns files “which contain outputs,” but the implementation now includes both *_o.h5 and *_i.h5. Please update the wording to avoid contract drift.

🤖 Prompt for AI Agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
In `@src/executorlib/standalone/hdf.py` around lines 165 - 171, Update the
get_cache_files docstring to reflect the current behavior: state that it
recursively searches cache_directory for HDF5 cache files matching both output
and input patterns (e.g., *_o.h5 and *_i.h5) and returns a list of those files,
rather than saying it returns only files "which contain outputs"; reference the
get_cache_files function name and mention the *_o.h5 and *_i.h5 patterns so the
docstring matches the implementation.

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Outside diff comments:
In `@src/executorlib/standalone/hdf.py`:
- Around line 165-171: Update the get_cache_files docstring to reflect the
current behavior: state that it recursively searches cache_directory for HDF5
cache files matching both output and input patterns (e.g., *_o.h5 and *_i.h5)
and returns a list of those files, rather than saying it returns only files
"which contain outputs"; reference the get_cache_files function name and mention
the *_o.h5 and *_i.h5 patterns so the docstring matches the implementation.

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 8a3b7d32-c97c-49b2-b1eb-e719e72d7acc

📥 Commits

Reviewing files that changed from the base of the PR and between 56da026 and 5c422bb.

📒 Files selected for processing (1)

• src/executorlib/standalone/hdf.py

[jan-janssen]

Summary by CodeRabbit

• Bug Fixes
  • Enhanced cache discovery to include both input and output cached artifacts, providing more complete cache file access.

[coderabbitai]

📝 Walkthrough

Walkthrough

The get_cache_files function in the HDF5 cache module is updated to discover both input and output cache files. The file discovery filter now matches both *_i.h5 and *_o.h5 filenames instead of only output files, expanding the cache inventory.

Changes

Cache File Discovery

Layer / File(s)	Summary
Cache file discovery filter update src/executorlib/standalone/hdf.py	The file matching logic in get_cache_files is expanded to include both *_i.h5 input cache and *_o.h5 output cache files when walking the cache directory.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

• pyiron/executorlib#681: Introduces the naming and layout convention for input (*_i.h5) and output (*_o.h5) cache files that this PR now discovers.

Poem

🐰 Behold! The cache files, both old and new,
Input and output, a unified view,
No longer overlooked, the data flows true,
With *_i.h5 and *_o.h5 in sight,
The discovery filter shines ever bright! ✨

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and specifically describes the main change: including *_i.h5 files in the get_cache_files() function, which matches the file-level summary of discovering both output and input cache files.
Docstring Coverage	✅ Passed	Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch cache_running

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.19%. Comparing base (56da026) to head (5c422bb).

Additional details and impacted files

@@ Coverage Diff @@## main #1004 +/- ##
=======================================
Coverage 94.19% 94.19% =======================================
Files 39 39 Lines 2103 2103 =======================================
Hits 1981 1981 Misses 122 122 

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[coderabbitai]

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)

src/executorlib/standalone/hdf.py (1)

165-171: ⚠️ Potential issue | 🟡 Minor | ⚡ Quick win

Update get_cache_files docstring to match new behavior.

The docstring still states this returns files “which contain outputs,” but the implementation now includes both *_o.h5 and *_i.h5. Please update the wording to avoid contract drift.

🤖 Prompt for AI Agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
In `@src/executorlib/standalone/hdf.py` around lines 165 - 171, Update the
get_cache_files docstring to reflect the current behavior: state that it
recursively searches cache_directory for HDF5 cache files matching both output
and input patterns (e.g., *_o.h5 and *_i.h5) and returns a list of those files,
rather than saying it returns only files "which contain outputs"; reference the
get_cache_files function name and mention the *_o.h5 and *_i.h5 patterns so the
docstring matches the implementation.

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Outside diff comments:
In `@src/executorlib/standalone/hdf.py`:
- Around line 165-171: Update the get_cache_files docstring to reflect the
current behavior: state that it recursively searches cache_directory for HDF5
cache files matching both output and input patterns (e.g., *_o.h5 and *_i.h5)
and returns a list of those files, rather than saying it returns only files
"which contain outputs"; reference the get_cache_files function name and mention
the *_o.h5 and *_i.h5 patterns so the docstring matches the implementation.

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 8a3b7d32-c97c-49b2-b1eb-e719e72d7acc

📥 Commits

Reviewing files that changed from the base of the PR and between 56da026 and 5c422bb.

📒 Files selected for processing (1)

• src/executorlib/standalone/hdf.py

[jan-janssen]

Summary by CodeRabbit

• Bug Fixes
  • Enhanced cache discovery to include both input and output cached artifacts, providing more complete cache file access.

[coderabbitai]

📝 Walkthrough

Walkthrough

The get_cache_files function in the HDF5 cache module is updated to discover both input and output cache files. The file discovery filter now matches both *_i.h5 and *_o.h5 filenames instead of only output files, expanding the cache inventory.

Changes

Cache File Discovery

Layer / File(s)	Summary
Cache file discovery filter update src/executorlib/standalone/hdf.py	The file matching logic in get_cache_files is expanded to include both *_i.h5 input cache and *_o.h5 output cache files when walking the cache directory.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

• pyiron/executorlib#681: Introduces the naming and layout convention for input (*_i.h5) and output (*_o.h5) cache files that this PR now discovers.

Poem

🐰 Behold! The cache files, both old and new,
Input and output, a unified view,
No longer overlooked, the data flows true,
With *_i.h5 and *_o.h5 in sight,
The discovery filter shines ever bright! ✨

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and specifically describes the main change: including *_i.h5 files in the get_cache_files() function, which matches the file-level summary of discovering both output and input cache files.
Docstring Coverage	✅ Passed	Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch cache_running

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.19%. Comparing base (56da026) to head (5c422bb).

Additional details and impacted files

@@ Coverage Diff @@## main #1004 +/- ##
=======================================
Coverage 94.19% 94.19% =======================================
Files 39 39 Lines 2103 2103 =======================================
Hits 1981 1981 Misses 122 122 

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[coderabbitai]

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)

src/executorlib/standalone/hdf.py (1)

165-171: ⚠️ Potential issue | 🟡 Minor | ⚡ Quick win

Update get_cache_files docstring to match new behavior.

The docstring still states this returns files “which contain outputs,” but the implementation now includes both *_o.h5 and *_i.h5. Please update the wording to avoid contract drift.

🤖 Prompt for AI Agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
In `@src/executorlib/standalone/hdf.py` around lines 165 - 171, Update the
get_cache_files docstring to reflect the current behavior: state that it
recursively searches cache_directory for HDF5 cache files matching both output
and input patterns (e.g., *_o.h5 and *_i.h5) and returns a list of those files,
rather than saying it returns only files "which contain outputs"; reference the
get_cache_files function name and mention the *_o.h5 and *_i.h5 patterns so the
docstring matches the implementation.

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Outside diff comments:
In `@src/executorlib/standalone/hdf.py`:
- Around line 165-171: Update the get_cache_files docstring to reflect the
current behavior: state that it recursively searches cache_directory for HDF5
cache files matching both output and input patterns (e.g., *_o.h5 and *_i.h5)
and returns a list of those files, rather than saying it returns only files
"which contain outputs"; reference the get_cache_files function name and mention
the *_o.h5 and *_i.h5 patterns so the docstring matches the implementation.

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 8a3b7d32-c97c-49b2-b1eb-e719e72d7acc

📥 Commits

Reviewing files that changed from the base of the PR and between 56da026 and 5c422bb.

📒 Files selected for processing (1)

• src/executorlib/standalone/hdf.py

[jan-janssen]

Summary by CodeRabbit

• Bug Fixes
  • Enhanced cache discovery to include both input and output cached artifacts, providing more complete cache file access.

[coderabbitai]

📝 Walkthrough

Walkthrough

The get_cache_files function in the HDF5 cache module is updated to discover both input and output cache files. The file discovery filter now matches both *_i.h5 and *_o.h5 filenames instead of only output files, expanding the cache inventory.

Changes

Cache File Discovery

Layer / File(s)	Summary
Cache file discovery filter update src/executorlib/standalone/hdf.py	The file matching logic in get_cache_files is expanded to include both *_i.h5 input cache and *_o.h5 output cache files when walking the cache directory.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

• pyiron/executorlib#681: Introduces the naming and layout convention for input (*_i.h5) and output (*_o.h5) cache files that this PR now discovers.

Poem

🐰 Behold! The cache files, both old and new,
Input and output, a unified view,
No longer overlooked, the data flows true,
With *_i.h5 and *_o.h5 in sight,
The discovery filter shines ever bright! ✨

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and specifically describes the main change: including *_i.h5 files in the get_cache_files() function, which matches the file-level summary of discovering both output and input cache files.
Docstring Coverage	✅ Passed	Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch cache_running

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.19%. Comparing base (56da026) to head (5c422bb).

Additional details and impacted files

@@ Coverage Diff @@## main #1004 +/- ##
=======================================
Coverage 94.19% 94.19% =======================================
Files 39 39 Lines 2103 2103 =======================================
Hits 1981 1981 Misses 122 122 

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[coderabbitai]

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)

src/executorlib/standalone/hdf.py (1)

165-171: ⚠️ Potential issue | 🟡 Minor | ⚡ Quick win

Update get_cache_files docstring to match new behavior.

The docstring still states this returns files “which contain outputs,” but the implementation now includes both *_o.h5 and *_i.h5. Please update the wording to avoid contract drift.

🤖 Prompt for AI Agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
In `@src/executorlib/standalone/hdf.py` around lines 165 - 171, Update the
get_cache_files docstring to reflect the current behavior: state that it
recursively searches cache_directory for HDF5 cache files matching both output
and input patterns (e.g., *_o.h5 and *_i.h5) and returns a list of those files,
rather than saying it returns only files "which contain outputs"; reference the
get_cache_files function name and mention the *_o.h5 and *_i.h5 patterns so the
docstring matches the implementation.

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Outside diff comments:
In `@src/executorlib/standalone/hdf.py`:
- Around line 165-171: Update the get_cache_files docstring to reflect the
current behavior: state that it recursively searches cache_directory for HDF5
cache files matching both output and input patterns (e.g., *_o.h5 and *_i.h5)
and returns a list of those files, rather than saying it returns only files
"which contain outputs"; reference the get_cache_files function name and mention
the *_o.h5 and *_i.h5 patterns so the docstring matches the implementation.

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 8a3b7d32-c97c-49b2-b1eb-e719e72d7acc

📥 Commits

Reviewing files that changed from the base of the PR and between 56da026 and 5c422bb.

📒 Files selected for processing (1)

• src/executorlib/standalone/hdf.py

[jan-janssen]

Summary by CodeRabbit

• Bug Fixes
  • Enhanced cache discovery to include both input and output cached artifacts, providing more complete cache file access.

[coderabbitai]

📝 Walkthrough

Walkthrough

The get_cache_files function in the HDF5 cache module is updated to discover both input and output cache files. The file discovery filter now matches both *_i.h5 and *_o.h5 filenames instead of only output files, expanding the cache inventory.

Changes

Cache File Discovery

Layer / File(s)	Summary
Cache file discovery filter update src/executorlib/standalone/hdf.py	The file matching logic in get_cache_files is expanded to include both *_i.h5 input cache and *_o.h5 output cache files when walking the cache directory.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

• pyiron/executorlib#681: Introduces the naming and layout convention for input (*_i.h5) and output (*_o.h5) cache files that this PR now discovers.

Poem

🐰 Behold! The cache files, both old and new,
Input and output, a unified view,
No longer overlooked, the data flows true,
With *_i.h5 and *_o.h5 in sight,
The discovery filter shines ever bright! ✨

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and specifically describes the main change: including *_i.h5 files in the get_cache_files() function, which matches the file-level summary of discovering both output and input cache files.
Docstring Coverage	✅ Passed	Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch cache_running

---

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❤️ Share

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_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.19%. Comparing base (56da026) to head (5c422bb).

Additional details and impacted files

@@ Coverage Diff @@## main #1004 +/- ##
=======================================
Coverage 94.19% 94.19% =======================================
Files 39 39 Lines 2103 2103 =======================================
Hits 1981 1981 Misses 122 122 

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[coderabbitai]

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)

src/executorlib/standalone/hdf.py (1)

165-171: ⚠️ Potential issue | 🟡 Minor | ⚡ Quick win

Update get_cache_files docstring to match new behavior.

The docstring still states this returns files “which contain outputs,” but the implementation now includes both *_o.h5 and *_i.h5. Please update the wording to avoid contract drift.

🤖 Prompt for AI Agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
In `@src/executorlib/standalone/hdf.py` around lines 165 - 171, Update the
get_cache_files docstring to reflect the current behavior: state that it
recursively searches cache_directory for HDF5 cache files matching both output
and input patterns (e.g., *_o.h5 and *_i.h5) and returns a list of those files,
rather than saying it returns only files "which contain outputs"; reference the
get_cache_files function name and mention the *_o.h5 and *_i.h5 patterns so the
docstring matches the implementation.

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Outside diff comments:
In `@src/executorlib/standalone/hdf.py`:
- Around line 165-171: Update the get_cache_files docstring to reflect the
current behavior: state that it recursively searches cache_directory for HDF5
cache files matching both output and input patterns (e.g., *_o.h5 and *_i.h5)
and returns a list of those files, rather than saying it returns only files
"which contain outputs"; reference the get_cache_files function name and mention
the *_o.h5 and *_i.h5 patterns so the docstring matches the implementation.

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 8a3b7d32-c97c-49b2-b1eb-e719e72d7acc

📥 Commits

Reviewing files that changed from the base of the PR and between 56da026 and 5c422bb.

📒 Files selected for processing (1)

• src/executorlib/standalone/hdf.py

[jan-janssen]

Summary by CodeRabbit

• Bug Fixes
  • Enhanced cache discovery to include both input and output cached artifacts, providing more complete cache file access.

[coderabbitai]

📝 Walkthrough

Walkthrough

The get_cache_files function in the HDF5 cache module is updated to discover both input and output cache files. The file discovery filter now matches both *_i.h5 and *_o.h5 filenames instead of only output files, expanding the cache inventory.

Changes

Cache File Discovery

Layer / File(s)	Summary
Cache file discovery filter update src/executorlib/standalone/hdf.py	The file matching logic in get_cache_files is expanded to include both *_i.h5 input cache and *_o.h5 output cache files when walking the cache directory.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

• pyiron/executorlib#681: Introduces the naming and layout convention for input (*_i.h5) and output (*_o.h5) cache files that this PR now discovers.

Poem

🐰 Behold! The cache files, both old and new,
Input and output, a unified view,
No longer overlooked, the data flows true,
With *_i.h5 and *_o.h5 in sight,
The discovery filter shines ever bright! ✨

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and specifically describes the main change: including *_i.h5 files in the get_cache_files() function, which matches the file-level summary of discovering both output and input cache files.
Docstring Coverage	✅ Passed	Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch cache_running

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.19%. Comparing base (56da026) to head (5c422bb).

Additional details and impacted files

@@ Coverage Diff @@## main #1004 +/- ##
=======================================
Coverage 94.19% 94.19% =======================================
Files 39 39 Lines 2103 2103 =======================================
Hits 1981 1981 Misses 122 122 

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[coderabbitai]

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)

src/executorlib/standalone/hdf.py (1)

165-171: ⚠️ Potential issue | 🟡 Minor | ⚡ Quick win

Update get_cache_files docstring to match new behavior.

The docstring still states this returns files “which contain outputs,” but the implementation now includes both *_o.h5 and *_i.h5. Please update the wording to avoid contract drift.

🤖 Prompt for AI Agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
In `@src/executorlib/standalone/hdf.py` around lines 165 - 171, Update the
get_cache_files docstring to reflect the current behavior: state that it
recursively searches cache_directory for HDF5 cache files matching both output
and input patterns (e.g., *_o.h5 and *_i.h5) and returns a list of those files,
rather than saying it returns only files "which contain outputs"; reference the
get_cache_files function name and mention the *_o.h5 and *_i.h5 patterns so the
docstring matches the implementation.

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Outside diff comments:
In `@src/executorlib/standalone/hdf.py`:
- Around line 165-171: Update the get_cache_files docstring to reflect the
current behavior: state that it recursively searches cache_directory for HDF5
cache files matching both output and input patterns (e.g., *_o.h5 and *_i.h5)
and returns a list of those files, rather than saying it returns only files
"which contain outputs"; reference the get_cache_files function name and mention
the *_o.h5 and *_i.h5 patterns so the docstring matches the implementation.

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 8a3b7d32-c97c-49b2-b1eb-e719e72d7acc

📥 Commits

Reviewing files that changed from the base of the PR and between 56da026 and 5c422bb.

📒 Files selected for processing (1)

• src/executorlib/standalone/hdf.py

[jan-janssen]

Summary by CodeRabbit

• Bug Fixes
  • Enhanced cache discovery to include both input and output cached artifacts, providing more complete cache file access.

[coderabbitai]

📝 Walkthrough

Walkthrough

The get_cache_files function in the HDF5 cache module is updated to discover both input and output cache files. The file discovery filter now matches both *_i.h5 and *_o.h5 filenames instead of only output files, expanding the cache inventory.

Changes

Cache File Discovery

Layer / File(s)	Summary
Cache file discovery filter update src/executorlib/standalone/hdf.py	The file matching logic in get_cache_files is expanded to include both *_i.h5 input cache and *_o.h5 output cache files when walking the cache directory.

Estimated code review effort

🎯 1 (Trivial) | ⏱️ ~3 minutes

Possibly related PRs

• pyiron/executorlib#681: Introduces the naming and layout convention for input (*_i.h5) and output (*_o.h5) cache files that this PR now discovers.

Poem

🐰 Behold! The cache files, both old and new,
Input and output, a unified view,
No longer overlooked, the data flows true,
With *_i.h5 and *_o.h5 in sight,
The discovery filter shines ever bright! ✨

🚥 Pre-merge checks | ✅ 5

✅ Passed checks (5 passed)

Check name	Status	Explanation
Description Check	✅ Passed	Check skipped - CodeRabbit’s high-level summary is enabled.
Title check	✅ Passed	The title clearly and specifically describes the main change: including *_i.h5 files in the get_cache_files() function, which matches the file-level summary of discovering both output and input cache files.
Docstring Coverage	✅ Passed	Docstring coverage is 100.00% which is sufficient. The required threshold is 80.00%.
Linked Issues check	✅ Passed	Check skipped because no linked issues were found for this pull request.
Out of Scope Changes check	✅ Passed	Check skipped because no linked issues were found for this pull request.

_{✏️ Tip: You can configure your own custom pre-merge checks in the settings.}

✨ Finishing Touches

📝 Generate docstrings

• Create stacked PR
• Commit on current branch

🧪 Generate unit tests (beta)

• Create PR with unit tests
• Commit unit tests in branch cache_running

---

Thanks for using CodeRabbit! It's free for OSS, and your support helps us grow. If you like it, consider giving us a shout-out.

❤️ Share

• X
• Mastodon
• Reddit
• LinkedIn

_{Comment @coderabbitai help to get the list of available commands and usage tips.}

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 94.19%. Comparing base (56da026) to head (5c422bb).

Additional details and impacted files

@@ Coverage Diff @@## main #1004 +/- ##
=======================================
Coverage 94.19% 94.19% =======================================
Files 39 39 Lines 2103 2103 =======================================
Hits 1981 1981 Misses 122 122 

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

🚀 New features to boost your workflow:

• ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

[coderabbitai]

Caution

Some comments are outside the diff and can’t be posted inline due to platform limitations.

⚠️ Outside diff range comments (1)

src/executorlib/standalone/hdf.py (1)

165-171: ⚠️ Potential issue | 🟡 Minor | ⚡ Quick win

Update get_cache_files docstring to match new behavior.

The docstring still states this returns files “which contain outputs,” but the implementation now includes both *_o.h5 and *_i.h5. Please update the wording to avoid contract drift.

🤖 Prompt for AI Agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
In `@src/executorlib/standalone/hdf.py` around lines 165 - 171, Update the
get_cache_files docstring to reflect the current behavior: state that it
recursively searches cache_directory for HDF5 cache files matching both output
and input patterns (e.g., *_o.h5 and *_i.h5) and returns a list of those files,
rather than saying it returns only files "which contain outputs"; reference the
get_cache_files function name and mention the *_o.h5 and *_i.h5 patterns so the
docstring matches the implementation.

🤖 Prompt for all review comments with AI agents

Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.
Outside diff comments:
In `@src/executorlib/standalone/hdf.py`:
- Around line 165-171: Update the get_cache_files docstring to reflect the
current behavior: state that it recursively searches cache_directory for HDF5
cache files matching both output and input patterns (e.g., *_o.h5 and *_i.h5)
and returns a list of those files, rather than saying it returns only files
"which contain outputs"; reference the get_cache_files function name and mention
the *_o.h5 and *_i.h5 patterns so the docstring matches the implementation.

---

ℹ️ Review info

⚙️ Run configuration

Configuration used: defaults

Review profile: CHILL

Plan: Pro

Run ID: 8a3b7d32-c97c-49b2-b1eb-e719e72d7acc

📥 Commits

Reviewing files that changed from the base of the PR and between 56da026 and 5c422bb.

📒 Files selected for processing (1)

• src/executorlib/standalone/hdf.py