[bug] SLURM: Fix CPUs per task - #569

Merged
jan-janssen merged 3 commits into
mainfrom
slurm_fix
Feb 11, 2025
Merged

[bug] SLURM: Fix CPUs per task#569
jan-janssen merged 3 commits into
mainfrom
slurm_fix

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@jan-janssenjan-janssen commented Feb 10, 2025

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Summary by CodeRabbit

  • Bug Fixes

    • Adjusted the formatting for the CPU allocation parameter in SLURM job submissions to ensure it adheres to the expected syntax, improving job scheduling reliability.
  • Tests

    • Added a new test for the SLURM command generation functionality to enhance test coverage.

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Walkthrough

The pull request modifies the generate_slurm_command function in executorlib/interactive/slurm.py. The change updates the construction of the --cpus-per-task argument by including an equal sign before the value when threads_per_core is greater than 1, ensuring proper SLURM syntax. Additionally, a new test method is added in tests/test_pysqa_subprocess.py to validate the updated functionality. No alterations were made to public entity declarations.

Changes

FileChange Summary
executorlib/.../slurm.pyUpdated the generate_slurm_command function to insert an equal sign in the --cpus-per-task argument, ensuring correct SLURM parameter format.
tests/.../test_pysqa_subprocess.pyAdded test_generate_slurm_command method to TestPysqaExecuteCommand class to test the generate_slurm_command functionality.

Sequence Diagram(s)

sequenceDiagram
participant Caller as Job Executor
participant CmdGen as generate_slurm_command
Caller->>CmdGen: Request command generation (threads_per_core > 1)
CmdGen->>CmdGen: Concatenate "--cpus-per-task=" with the thread count
CmdGen-->>Caller: Return updated command list
Loading

Poem

I'm a rabbit, hopping in the code field bright,
Fixing bugs with leaps of delight.
An equal sign now joins the fray,
Making SLURM commands go the right way.
With whiskers twitching in a rhythmic beat,
I celebrate changes that make our code complete!

✨ Finishing Touches
  • 📝 Generate Docstrings (Beta)

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

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@jan-janssen
jan-janssen marked this pull request as draft February 10, 2025 21:06
@codecov

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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 95.89%. Comparing base (9f232ff) to head (1fe451d).
Report is 2 commits behind head on main.

Additional details and impacted files
@@ Coverage Diff @@## main #569 +/- ##
==========================================
+ Coverage 95.73% 95.89% +0.15% 
==========================================
Files 26 26 Lines 1149 1168 +19 ==========================================
+ Hits 1100 1120 +20 + Misses 49 48 -1 

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@jan-janssen
jan-janssen marked this pull request as ready for review February 11, 2025 11:14

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Actionable comments posted: 0

🧹 Nitpick comments (1)
tests/test_pysqa_subprocess.py (1)

48-59: Consider adding more test cases.

The test effectively validates the SLURM command generation with threads_per_core=2, confirming the correct formatting of --cpus-per-task=2. However, consider adding test cases for:

  1. threads_per_core=1 to verify behavior when equal sign isn't needed
  2. Edge cases like threads_per_core=0 or None
  3. Use a more portable path instead of hardcoding "/tmp/test"

Here's a suggested implementation:

deftest_generate_slurm_command_cases(self):
test_cases= [
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 2},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task=2']
},
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 1},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task', '1']
},
{
'input': {'cores': 1, 'cwd': '.'}, # default case'expected': ['srun', '-n', '1', '-D', '.']
}
]
forcaseintest_cases:
withself.subTest(threads_per_core=case['input'].get('threads_per_core')):
command_lst=generate_slurm_command(**case['input'])
self.assertEqual(command_lst, case['expected'])
📜 Review details

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Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between cbe50ab and 1fe451d.

📒 Files selected for processing (1)
  • tests/test_pysqa_subprocess.py (2 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (3)
  • GitHub Check: unittest_win
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
🔇 Additional comments (1)
tests/test_pysqa_subprocess.py (1)

2-2: LGTM!

The import statement is correctly placed and specifically imports the function being tested.

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all \u003cpre\u003e\u003ccode\u003e blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks"); } } catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); } })(); (function(){ try { var __m = "github.com"; var __re = new RegExp('^' + "github\\.com" + '
Skip to content

[bug] SLURM: Fix CPUs per task - #569

Merged
jan-janssen merged 3 commits into
mainfrom
slurm_fix
Feb 11, 2025
Merged

[bug] SLURM: Fix CPUs per task#569
jan-janssen merged 3 commits into
mainfrom
slurm_fix

Conversation

@jan-janssen

@jan-janssenjan-janssen commented Feb 10, 2025

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Summary by CodeRabbit

  • Bug Fixes

    • Adjusted the formatting for the CPU allocation parameter in SLURM job submissions to ensure it adheres to the expected syntax, improving job scheduling reliability.
  • Tests

    • Added a new test for the SLURM command generation functionality to enhance test coverage.

@coderabbitai

coderabbitaiBot commented Feb 10, 2025

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Contributor

Walkthrough

The pull request modifies the generate_slurm_command function in executorlib/interactive/slurm.py. The change updates the construction of the --cpus-per-task argument by including an equal sign before the value when threads_per_core is greater than 1, ensuring proper SLURM syntax. Additionally, a new test method is added in tests/test_pysqa_subprocess.py to validate the updated functionality. No alterations were made to public entity declarations.

Changes

FileChange Summary
executorlib/.../slurm.pyUpdated the generate_slurm_command function to insert an equal sign in the --cpus-per-task argument, ensuring correct SLURM parameter format.
tests/.../test_pysqa_subprocess.pyAdded test_generate_slurm_command method to TestPysqaExecuteCommand class to test the generate_slurm_command functionality.

Sequence Diagram(s)

sequenceDiagram
participant Caller as Job Executor
participant CmdGen as generate_slurm_command
Caller->>CmdGen: Request command generation (threads_per_core > 1)
CmdGen->>CmdGen: Concatenate "--cpus-per-task=" with the thread count
CmdGen-->>Caller: Return updated command list
Loading

Poem

I'm a rabbit, hopping in the code field bright,
Fixing bugs with leaps of delight.
An equal sign now joins the fray,
Making SLURM commands go the right way.
With whiskers twitching in a rhythmic beat,
I celebrate changes that make our code complete!

✨ Finishing Touches
  • 📝 Generate Docstrings (Beta)

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share
🪧 Tips

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@jan-janssen
jan-janssen marked this pull request as draft February 10, 2025 21:06
@codecov

codecovBot commented Feb 11, 2025

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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 95.89%. Comparing base (9f232ff) to head (1fe451d).
Report is 2 commits behind head on main.

Additional details and impacted files
@@ Coverage Diff @@## main #569 +/- ##
==========================================
+ Coverage 95.73% 95.89% +0.15% 
==========================================
Files 26 26 Lines 1149 1168 +19 ==========================================
+ Hits 1100 1120 +20 + Misses 49 48 -1 

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@jan-janssen
jan-janssen marked this pull request as ready for review February 11, 2025 11:14

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Actionable comments posted: 0

🧹 Nitpick comments (1)
tests/test_pysqa_subprocess.py (1)

48-59: Consider adding more test cases.

The test effectively validates the SLURM command generation with threads_per_core=2, confirming the correct formatting of --cpus-per-task=2. However, consider adding test cases for:

  1. threads_per_core=1 to verify behavior when equal sign isn't needed
  2. Edge cases like threads_per_core=0 or None
  3. Use a more portable path instead of hardcoding "/tmp/test"

Here's a suggested implementation:

deftest_generate_slurm_command_cases(self):
test_cases= [
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 2},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task=2']
},
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 1},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task', '1']
},
{
'input': {'cores': 1, 'cwd': '.'}, # default case'expected': ['srun', '-n', '1', '-D', '.']
}
]
forcaseintest_cases:
withself.subTest(threads_per_core=case['input'].get('threads_per_core')):
command_lst=generate_slurm_command(**case['input'])
self.assertEqual(command_lst, case['expected'])
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between cbe50ab and 1fe451d.

📒 Files selected for processing (1)
  • tests/test_pysqa_subprocess.py (2 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (3)
  • GitHub Check: unittest_win
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
🔇 Additional comments (1)
tests/test_pysqa_subprocess.py (1)

2-2: LGTM!

The import statement is correctly placed and specifically imports the function being tested.

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@jan-janssen
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix"); } } catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

[bug] SLURM: Fix CPUs per task - #569

Merged
jan-janssen merged 3 commits into
mainfrom
slurm_fix
Feb 11, 2025
Merged

[bug] SLURM: Fix CPUs per task#569
jan-janssen merged 3 commits into
mainfrom
slurm_fix

Conversation

@jan-janssen

@jan-janssenjan-janssen commented Feb 10, 2025

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Summary by CodeRabbit

  • Bug Fixes

    • Adjusted the formatting for the CPU allocation parameter in SLURM job submissions to ensure it adheres to the expected syntax, improving job scheduling reliability.
  • Tests

    • Added a new test for the SLURM command generation functionality to enhance test coverage.

@coderabbitai

coderabbitaiBot commented Feb 10, 2025

Copy link
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Contributor

Walkthrough

The pull request modifies the generate_slurm_command function in executorlib/interactive/slurm.py. The change updates the construction of the --cpus-per-task argument by including an equal sign before the value when threads_per_core is greater than 1, ensuring proper SLURM syntax. Additionally, a new test method is added in tests/test_pysqa_subprocess.py to validate the updated functionality. No alterations were made to public entity declarations.

Changes

FileChange Summary
executorlib/.../slurm.pyUpdated the generate_slurm_command function to insert an equal sign in the --cpus-per-task argument, ensuring correct SLURM parameter format.
tests/.../test_pysqa_subprocess.pyAdded test_generate_slurm_command method to TestPysqaExecuteCommand class to test the generate_slurm_command functionality.

Sequence Diagram(s)

sequenceDiagram
participant Caller as Job Executor
participant CmdGen as generate_slurm_command
Caller->>CmdGen: Request command generation (threads_per_core > 1)
CmdGen->>CmdGen: Concatenate "--cpus-per-task=" with the thread count
CmdGen-->>Caller: Return updated command list
Loading

Poem

I'm a rabbit, hopping in the code field bright,
Fixing bugs with leaps of delight.
An equal sign now joins the fray,
Making SLURM commands go the right way.
With whiskers twitching in a rhythmic beat,
I celebrate changes that make our code complete!

✨ Finishing Touches
  • 📝 Generate Docstrings (Beta)

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share
🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
    • I pushed a fix in commit <commit_id>, please review it.
    • Generate unit testing code for this file.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai generate unit testing code for this file.
    • @coderabbitai modularize this function.
  • PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
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    • @coderabbitai read src/utils.ts and generate unit testing code.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

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@jan-janssen
jan-janssen marked this pull request as draft February 10, 2025 21:06
@codecov

codecovBot commented Feb 11, 2025

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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 95.89%. Comparing base (9f232ff) to head (1fe451d).
Report is 2 commits behind head on main.

Additional details and impacted files
@@ Coverage Diff @@## main #569 +/- ##
==========================================
+ Coverage 95.73% 95.89% +0.15% 
==========================================
Files 26 26 Lines 1149 1168 +19 ==========================================
+ Hits 1100 1120 +20 + Misses 49 48 -1 

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@jan-janssen
jan-janssen marked this pull request as ready for review February 11, 2025 11:14

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Actionable comments posted: 0

🧹 Nitpick comments (1)
tests/test_pysqa_subprocess.py (1)

48-59: Consider adding more test cases.

The test effectively validates the SLURM command generation with threads_per_core=2, confirming the correct formatting of --cpus-per-task=2. However, consider adding test cases for:

  1. threads_per_core=1 to verify behavior when equal sign isn't needed
  2. Edge cases like threads_per_core=0 or None
  3. Use a more portable path instead of hardcoding "/tmp/test"

Here's a suggested implementation:

deftest_generate_slurm_command_cases(self):
test_cases= [
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 2},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task=2']
},
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 1},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task', '1']
},
{
'input': {'cores': 1, 'cwd': '.'}, # default case'expected': ['srun', '-n', '1', '-D', '.']
}
]
forcaseintest_cases:
withself.subTest(threads_per_core=case['input'].get('threads_per_core')):
command_lst=generate_slurm_command(**case['input'])
self.assertEqual(command_lst, case['expected'])
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📒 Files selected for processing (1)
  • tests/test_pysqa_subprocess.py (2 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (3)
  • GitHub Check: unittest_win
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
🔇 Additional comments (1)
tests/test_pysqa_subprocess.py (1)

2-2: LGTM!

The import statement is correctly placed and specifically imports the function being tested.

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length \u003e 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms"); } } catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

[bug] SLURM: Fix CPUs per task - #569

Merged
jan-janssen merged 3 commits into
mainfrom
slurm_fix
Feb 11, 2025
Merged

[bug] SLURM: Fix CPUs per task#569
jan-janssen merged 3 commits into
mainfrom
slurm_fix

Conversation

@jan-janssen

@jan-janssenjan-janssen commented Feb 10, 2025

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Summary by CodeRabbit

  • Bug Fixes

    • Adjusted the formatting for the CPU allocation parameter in SLURM job submissions to ensure it adheres to the expected syntax, improving job scheduling reliability.
  • Tests

    • Added a new test for the SLURM command generation functionality to enhance test coverage.

@coderabbitai

coderabbitaiBot commented Feb 10, 2025

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Walkthrough

The pull request modifies the generate_slurm_command function in executorlib/interactive/slurm.py. The change updates the construction of the --cpus-per-task argument by including an equal sign before the value when threads_per_core is greater than 1, ensuring proper SLURM syntax. Additionally, a new test method is added in tests/test_pysqa_subprocess.py to validate the updated functionality. No alterations were made to public entity declarations.

Changes

FileChange Summary
executorlib/.../slurm.pyUpdated the generate_slurm_command function to insert an equal sign in the --cpus-per-task argument, ensuring correct SLURM parameter format.
tests/.../test_pysqa_subprocess.pyAdded test_generate_slurm_command method to TestPysqaExecuteCommand class to test the generate_slurm_command functionality.

Sequence Diagram(s)

sequenceDiagram
participant Caller as Job Executor
participant CmdGen as generate_slurm_command
Caller->>CmdGen: Request command generation (threads_per_core > 1)
CmdGen->>CmdGen: Concatenate "--cpus-per-task=" with the thread count
CmdGen-->>Caller: Return updated command list
Loading

Poem

I'm a rabbit, hopping in the code field bright,
Fixing bugs with leaps of delight.
An equal sign now joins the fray,
Making SLURM commands go the right way.
With whiskers twitching in a rhythmic beat,
I celebrate changes that make our code complete!

✨ Finishing Touches
  • 📝 Generate Docstrings (Beta)

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share
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@jan-janssen
jan-janssen marked this pull request as draft February 10, 2025 21:06
@codecov

codecovBot commented Feb 11, 2025

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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 95.89%. Comparing base (9f232ff) to head (1fe451d).
Report is 2 commits behind head on main.

Additional details and impacted files
@@ Coverage Diff @@## main #569 +/- ##
==========================================
+ Coverage 95.73% 95.89% +0.15% 
==========================================
Files 26 26 Lines 1149 1168 +19 ==========================================
+ Hits 1100 1120 +20 + Misses 49 48 -1 

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@jan-janssen
jan-janssen marked this pull request as ready for review February 11, 2025 11:14

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Actionable comments posted: 0

🧹 Nitpick comments (1)
tests/test_pysqa_subprocess.py (1)

48-59: Consider adding more test cases.

The test effectively validates the SLURM command generation with threads_per_core=2, confirming the correct formatting of --cpus-per-task=2. However, consider adding test cases for:

  1. threads_per_core=1 to verify behavior when equal sign isn't needed
  2. Edge cases like threads_per_core=0 or None
  3. Use a more portable path instead of hardcoding "/tmp/test"

Here's a suggested implementation:

deftest_generate_slurm_command_cases(self):
test_cases= [
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 2},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task=2']
},
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 1},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task', '1']
},
{
'input': {'cores': 1, 'cwd': '.'}, # default case'expected': ['srun', '-n', '1', '-D', '.']
}
]
forcaseintest_cases:
withself.subTest(threads_per_core=case['input'].get('threads_per_core')):
command_lst=generate_slurm_command(**case['input'])
self.assertEqual(command_lst, case['expected'])
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between cbe50ab and 1fe451d.

📒 Files selected for processing (1)
  • tests/test_pysqa_subprocess.py (2 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (3)
  • GitHub Check: unittest_win
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
🔇 Additional comments (1)
tests/test_pysqa_subprocess.py (1)

2-2: LGTM!

The import statement is correctly placed and specifically imports the function being tested.

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links"); } } catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); } })(); (function(){ try { var __m = "youtube.com"; var __re = new RegExp('^' + "youtube\\.com" + '
Skip to content

[bug] SLURM: Fix CPUs per task - #569

Merged
jan-janssen merged 3 commits into
mainfrom
slurm_fix
Feb 11, 2025
Merged

[bug] SLURM: Fix CPUs per task#569
jan-janssen merged 3 commits into
mainfrom
slurm_fix

Conversation

@jan-janssen

@jan-janssenjan-janssen commented Feb 10, 2025

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Summary by CodeRabbit

  • Bug Fixes

    • Adjusted the formatting for the CPU allocation parameter in SLURM job submissions to ensure it adheres to the expected syntax, improving job scheduling reliability.
  • Tests

    • Added a new test for the SLURM command generation functionality to enhance test coverage.

@coderabbitai

coderabbitaiBot commented Feb 10, 2025

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Contributor

Walkthrough

The pull request modifies the generate_slurm_command function in executorlib/interactive/slurm.py. The change updates the construction of the --cpus-per-task argument by including an equal sign before the value when threads_per_core is greater than 1, ensuring proper SLURM syntax. Additionally, a new test method is added in tests/test_pysqa_subprocess.py to validate the updated functionality. No alterations were made to public entity declarations.

Changes

FileChange Summary
executorlib/.../slurm.pyUpdated the generate_slurm_command function to insert an equal sign in the --cpus-per-task argument, ensuring correct SLURM parameter format.
tests/.../test_pysqa_subprocess.pyAdded test_generate_slurm_command method to TestPysqaExecuteCommand class to test the generate_slurm_command functionality.

Sequence Diagram(s)

sequenceDiagram
participant Caller as Job Executor
participant CmdGen as generate_slurm_command
Caller->>CmdGen: Request command generation (threads_per_core > 1)
CmdGen->>CmdGen: Concatenate "--cpus-per-task=" with the thread count
CmdGen-->>Caller: Return updated command list
Loading

Poem

I'm a rabbit, hopping in the code field bright,
Fixing bugs with leaps of delight.
An equal sign now joins the fray,
Making SLURM commands go the right way.
With whiskers twitching in a rhythmic beat,
I celebrate changes that make our code complete!

✨ Finishing Touches
  • 📝 Generate Docstrings (Beta)

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share
🪧 Tips

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There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
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    • Generate unit testing code for this file.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai generate unit testing code for this file.
    • @coderabbitai modularize this function.
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    • @coderabbitai read src/utils.ts and generate unit testing code.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

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  • @coderabbitai pause to pause the reviews on a PR.
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  • Add @coderabbitai ignore anywhere in the PR description to prevent this PR from being reviewed.
  • Add @coderabbitai summary to generate the high-level summary at a specific location in the PR description.
  • Add @coderabbitai anywhere in the PR title to generate the title automatically.

CodeRabbit Configuration File (.coderabbit.yaml)

  • You can programmatically configure CodeRabbit by adding a .coderabbit.yaml file to the root of your repository.
  • Please see the configuration documentation for more information.
  • If your editor has YAML language server enabled, you can add the path at the top of this file to enable auto-completion and validation: # yaml-language-server: $schema=https://coderabbit.ai/integrations/schema.v2.json

Documentation and Community

  • Visit our Documentation for detailed information on how to use CodeRabbit.
  • Join our Discord Community to get help, request features, and share feedback.
  • Follow us on X/Twitter for updates and announcements.

@jan-janssen
jan-janssen marked this pull request as draft February 10, 2025 21:06
@codecov

codecovBot commented Feb 11, 2025

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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 95.89%. Comparing base (9f232ff) to head (1fe451d).
Report is 2 commits behind head on main.

Additional details and impacted files
@@ Coverage Diff @@## main #569 +/- ##
==========================================
+ Coverage 95.73% 95.89% +0.15% 
==========================================
Files 26 26 Lines 1149 1168 +19 ==========================================
+ Hits 1100 1120 +20 + Misses 49 48 -1 

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@jan-janssen
jan-janssen marked this pull request as ready for review February 11, 2025 11:14

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Actionable comments posted: 0

🧹 Nitpick comments (1)
tests/test_pysqa_subprocess.py (1)

48-59: Consider adding more test cases.

The test effectively validates the SLURM command generation with threads_per_core=2, confirming the correct formatting of --cpus-per-task=2. However, consider adding test cases for:

  1. threads_per_core=1 to verify behavior when equal sign isn't needed
  2. Edge cases like threads_per_core=0 or None
  3. Use a more portable path instead of hardcoding "/tmp/test"

Here's a suggested implementation:

deftest_generate_slurm_command_cases(self):
test_cases= [
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 2},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task=2']
},
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 1},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task', '1']
},
{
'input': {'cores': 1, 'cwd': '.'}, # default case'expected': ['srun', '-n', '1', '-D', '.']
}
]
forcaseintest_cases:
withself.subTest(threads_per_core=case['input'].get('threads_per_core')):
command_lst=generate_slurm_command(**case['input'])
self.assertEqual(command_lst, case['expected'])
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between cbe50ab and 1fe451d.

📒 Files selected for processing (1)
  • tests/test_pysqa_subprocess.py (2 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (3)
  • GitHub Check: unittest_win
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
🔇 Additional comments (1)
tests/test_pysqa_subprocess.py (1)

2-2: LGTM!

The import statement is correctly placed and specifically imports the function being tested.

Sign up for freeto join this conversation on GitHub. Already have an account? Sign in to comment

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Successfully merging this pull request may close these issues.

1 participant

@jan-janssen
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default"); } } catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

[bug] SLURM: Fix CPUs per task - #569

Merged
jan-janssen merged 3 commits into
mainfrom
slurm_fix
Feb 11, 2025
Merged

[bug] SLURM: Fix CPUs per task#569
jan-janssen merged 3 commits into
mainfrom
slurm_fix

Conversation

@jan-janssen

@jan-janssenjan-janssen commented Feb 10, 2025

Copy link
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Summary by CodeRabbit

  • Bug Fixes

    • Adjusted the formatting for the CPU allocation parameter in SLURM job submissions to ensure it adheres to the expected syntax, improving job scheduling reliability.
  • Tests

    • Added a new test for the SLURM command generation functionality to enhance test coverage.

@coderabbitai

coderabbitaiBot commented Feb 10, 2025

Copy link
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Contributor

Walkthrough

The pull request modifies the generate_slurm_command function in executorlib/interactive/slurm.py. The change updates the construction of the --cpus-per-task argument by including an equal sign before the value when threads_per_core is greater than 1, ensuring proper SLURM syntax. Additionally, a new test method is added in tests/test_pysqa_subprocess.py to validate the updated functionality. No alterations were made to public entity declarations.

Changes

FileChange Summary
executorlib/.../slurm.pyUpdated the generate_slurm_command function to insert an equal sign in the --cpus-per-task argument, ensuring correct SLURM parameter format.
tests/.../test_pysqa_subprocess.pyAdded test_generate_slurm_command method to TestPysqaExecuteCommand class to test the generate_slurm_command functionality.

Sequence Diagram(s)

sequenceDiagram
participant Caller as Job Executor
participant CmdGen as generate_slurm_command
Caller->>CmdGen: Request command generation (threads_per_core > 1)
CmdGen->>CmdGen: Concatenate "--cpus-per-task=" with the thread count
CmdGen-->>Caller: Return updated command list
Loading

Poem

I'm a rabbit, hopping in the code field bright,
Fixing bugs with leaps of delight.
An equal sign now joins the fray,
Making SLURM commands go the right way.
With whiskers twitching in a rhythmic beat,
I celebrate changes that make our code complete!

✨ Finishing Touches
  • 📝 Generate Docstrings (Beta)

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share
🪧 Tips

Chat

There are 3 ways to chat with CodeRabbit:

  • Review comments: Directly reply to a review comment made by CodeRabbit. Example:
    • I pushed a fix in commit <commit_id>, please review it.
    • Generate unit testing code for this file.
    • Open a follow-up GitHub issue for this discussion.
  • Files and specific lines of code (under the "Files changed" tab): Tag @coderabbitai in a new review comment at the desired location with your query. Examples:
    • @coderabbitai generate unit testing code for this file.
    • @coderabbitai modularize this function.
  • PR comments: Tag @coderabbitai in a new PR comment to ask questions about the PR branch. For the best results, please provide a very specific query, as very limited context is provided in this mode. Examples:
    • @coderabbitai gather interesting stats about this repository and render them as a table. Additionally, render a pie chart showing the language distribution in the codebase.
    • @coderabbitai read src/utils.ts and generate unit testing code.
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@jan-janssen
jan-janssen marked this pull request as draft February 10, 2025 21:06
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 95.89%. Comparing base (9f232ff) to head (1fe451d).
Report is 2 commits behind head on main.

Additional details and impacted files
@@ Coverage Diff @@## main #569 +/- ##
==========================================
+ Coverage 95.73% 95.89% +0.15% 
==========================================
Files 26 26 Lines 1149 1168 +19 ==========================================
+ Hits 1100 1120 +20 + Misses 49 48 -1 

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

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jan-janssen marked this pull request as ready for review February 11, 2025 11:14

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Actionable comments posted: 0

🧹 Nitpick comments (1)
tests/test_pysqa_subprocess.py (1)

48-59: Consider adding more test cases.

The test effectively validates the SLURM command generation with threads_per_core=2, confirming the correct formatting of --cpus-per-task=2. However, consider adding test cases for:

  1. threads_per_core=1 to verify behavior when equal sign isn't needed
  2. Edge cases like threads_per_core=0 or None
  3. Use a more portable path instead of hardcoding "/tmp/test"

Here's a suggested implementation:

deftest_generate_slurm_command_cases(self):
test_cases= [
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 2},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task=2']
},
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 1},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task', '1']
},
{
'input': {'cores': 1, 'cwd': '.'}, # default case'expected': ['srun', '-n', '1', '-D', '.']
}
]
forcaseintest_cases:
withself.subTest(threads_per_core=case['input'].get('threads_per_core')):
command_lst=generate_slurm_command(**case['input'])
self.assertEqual(command_lst, case['expected'])
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📒 Files selected for processing (1)
  • tests/test_pysqa_subprocess.py (2 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (3)
  • GitHub Check: unittest_win
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
🔇 Additional comments (1)
tests/test_pysqa_subprocess.py (1)

2-2: LGTM!

The import statement is correctly placed and specifically imports the function being tested.

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, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers"); } } catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); } })(); (function(){ try { var __m = "*"; var __re = new RegExp('^' + ".*" + '
Skip to content

[bug] SLURM: Fix CPUs per task - #569

Merged
jan-janssen merged 3 commits into
mainfrom
slurm_fix
Feb 11, 2025
Merged

[bug] SLURM: Fix CPUs per task#569
jan-janssen merged 3 commits into
mainfrom
slurm_fix

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@jan-janssen

@jan-janssenjan-janssen commented Feb 10, 2025

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Summary by CodeRabbit

  • Bug Fixes

    • Adjusted the formatting for the CPU allocation parameter in SLURM job submissions to ensure it adheres to the expected syntax, improving job scheduling reliability.
  • Tests

    • Added a new test for the SLURM command generation functionality to enhance test coverage.

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Walkthrough

The pull request modifies the generate_slurm_command function in executorlib/interactive/slurm.py. The change updates the construction of the --cpus-per-task argument by including an equal sign before the value when threads_per_core is greater than 1, ensuring proper SLURM syntax. Additionally, a new test method is added in tests/test_pysqa_subprocess.py to validate the updated functionality. No alterations were made to public entity declarations.

Changes

FileChange Summary
executorlib/.../slurm.pyUpdated the generate_slurm_command function to insert an equal sign in the --cpus-per-task argument, ensuring correct SLURM parameter format.
tests/.../test_pysqa_subprocess.pyAdded test_generate_slurm_command method to TestPysqaExecuteCommand class to test the generate_slurm_command functionality.

Sequence Diagram(s)

sequenceDiagram
participant Caller as Job Executor
participant CmdGen as generate_slurm_command
Caller->>CmdGen: Request command generation (threads_per_core > 1)
CmdGen->>CmdGen: Concatenate "--cpus-per-task=" with the thread count
CmdGen-->>Caller: Return updated command list
Loading

Poem

I'm a rabbit, hopping in the code field bright,
Fixing bugs with leaps of delight.
An equal sign now joins the fray,
Making SLURM commands go the right way.
With whiskers twitching in a rhythmic beat,
I celebrate changes that make our code complete!

✨ Finishing Touches
  • 📝 Generate Docstrings (Beta)

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

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@jan-janssen
jan-janssen marked this pull request as draft February 10, 2025 21:06
@codecov

codecovBot commented Feb 11, 2025

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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 95.89%. Comparing base (9f232ff) to head (1fe451d).
Report is 2 commits behind head on main.

Additional details and impacted files
@@ Coverage Diff @@## main #569 +/- ##
==========================================
+ Coverage 95.73% 95.89% +0.15% 
==========================================
Files 26 26 Lines 1149 1168 +19 ==========================================
+ Hits 1100 1120 +20 + Misses 49 48 -1 

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@jan-janssen
jan-janssen marked this pull request as ready for review February 11, 2025 11:14

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Actionable comments posted: 0

🧹 Nitpick comments (1)
tests/test_pysqa_subprocess.py (1)

48-59: Consider adding more test cases.

The test effectively validates the SLURM command generation with threads_per_core=2, confirming the correct formatting of --cpus-per-task=2. However, consider adding test cases for:

  1. threads_per_core=1 to verify behavior when equal sign isn't needed
  2. Edge cases like threads_per_core=0 or None
  3. Use a more portable path instead of hardcoding "/tmp/test"

Here's a suggested implementation:

deftest_generate_slurm_command_cases(self):
test_cases= [
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 2},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task=2']
},
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 1},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task', '1']
},
{
'input': {'cores': 1, 'cwd': '.'}, # default case'expected': ['srun', '-n', '1', '-D', '.']
}
]
forcaseintest_cases:
withself.subTest(threads_per_core=case['input'].get('threads_per_core')):
command_lst=generate_slurm_command(**case['input'])
self.assertEqual(command_lst, case['expected'])
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between cbe50ab and 1fe451d.

📒 Files selected for processing (1)
  • tests/test_pysqa_subprocess.py (2 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (3)
  • GitHub Check: unittest_win
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
🔇 Additional comments (1)
tests/test_pysqa_subprocess.py (1)

2-2: LGTM!

The import statement is correctly placed and specifically imports the function being tested.

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@jan-janssen
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode"); } } catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); } })(); })();
Skip to content

[bug] SLURM: Fix CPUs per task - #569

Merged
jan-janssen merged 3 commits into
mainfrom
slurm_fix
Feb 11, 2025
Merged

[bug] SLURM: Fix CPUs per task#569
jan-janssen merged 3 commits into
mainfrom
slurm_fix

Conversation

@jan-janssen

@jan-janssenjan-janssen commented Feb 10, 2025

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Summary by CodeRabbit

  • Bug Fixes

    • Adjusted the formatting for the CPU allocation parameter in SLURM job submissions to ensure it adheres to the expected syntax, improving job scheduling reliability.
  • Tests

    • Added a new test for the SLURM command generation functionality to enhance test coverage.

@coderabbitai

coderabbitaiBot commented Feb 10, 2025

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Contributor

Walkthrough

The pull request modifies the generate_slurm_command function in executorlib/interactive/slurm.py. The change updates the construction of the --cpus-per-task argument by including an equal sign before the value when threads_per_core is greater than 1, ensuring proper SLURM syntax. Additionally, a new test method is added in tests/test_pysqa_subprocess.py to validate the updated functionality. No alterations were made to public entity declarations.

Changes

FileChange Summary
executorlib/.../slurm.pyUpdated the generate_slurm_command function to insert an equal sign in the --cpus-per-task argument, ensuring correct SLURM parameter format.
tests/.../test_pysqa_subprocess.pyAdded test_generate_slurm_command method to TestPysqaExecuteCommand class to test the generate_slurm_command functionality.

Sequence Diagram(s)

sequenceDiagram
participant Caller as Job Executor
participant CmdGen as generate_slurm_command
Caller->>CmdGen: Request command generation (threads_per_core > 1)
CmdGen->>CmdGen: Concatenate "--cpus-per-task=" with the thread count
CmdGen-->>Caller: Return updated command list
Loading

Poem

I'm a rabbit, hopping in the code field bright,
Fixing bugs with leaps of delight.
An equal sign now joins the fray,
Making SLURM commands go the right way.
With whiskers twitching in a rhythmic beat,
I celebrate changes that make our code complete!

✨ Finishing Touches
  • 📝 Generate Docstrings (Beta)

Thank you for using CodeRabbit. We offer it for free to the OSS community and would appreciate your support in helping us grow. If you find it useful, would you consider giving us a shout-out on your favorite social media?

❤️ Share
🪧 Tips

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    • Generate unit testing code for this file.
    • Open a follow-up GitHub issue for this discussion.
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    • @coderabbitai read src/utils.ts and generate unit testing code.
    • @coderabbitai read the files in the src/scheduler package and generate a class diagram using mermaid and a README in the markdown format.
    • @coderabbitai help me debug CodeRabbit configuration file.

Note: Be mindful of the bot's finite context window. It's strongly recommended to break down tasks such as reading entire modules into smaller chunks. For a focused discussion, use review comments to chat about specific files and their changes, instead of using the PR comments.

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@jan-janssen
jan-janssen marked this pull request as draft February 10, 2025 21:06
@codecov

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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 95.89%. Comparing base (9f232ff) to head (1fe451d).
Report is 2 commits behind head on main.

Additional details and impacted files
@@ Coverage Diff @@## main #569 +/- ##
==========================================
+ Coverage 95.73% 95.89% +0.15% 
==========================================
Files 26 26 Lines 1149 1168 +19 ==========================================
+ Hits 1100 1120 +20 + Misses 49 48 -1 

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@jan-janssen
jan-janssen marked this pull request as ready for review February 11, 2025 11:14

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Actionable comments posted: 0

🧹 Nitpick comments (1)
tests/test_pysqa_subprocess.py (1)

48-59: Consider adding more test cases.

The test effectively validates the SLURM command generation with threads_per_core=2, confirming the correct formatting of --cpus-per-task=2. However, consider adding test cases for:

  1. threads_per_core=1 to verify behavior when equal sign isn't needed
  2. Edge cases like threads_per_core=0 or None
  3. Use a more portable path instead of hardcoding "/tmp/test"

Here's a suggested implementation:

deftest_generate_slurm_command_cases(self):
test_cases= [
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 2},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task=2']
},
{
'input': {'cores': 1, 'cwd': '.', 'threads_per_core': 1},
'expected': ['srun', '-n', '1', '-D', '.', '--cpus-per-task', '1']
},
{
'input': {'cores': 1, 'cwd': '.'}, # default case'expected': ['srun', '-n', '1', '-D', '.']
}
]
forcaseintest_cases:
withself.subTest(threads_per_core=case['input'].get('threads_per_core')):
command_lst=generate_slurm_command(**case['input'])
self.assertEqual(command_lst, case['expected'])
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between cbe50ab and 1fe451d.

📒 Files selected for processing (1)
  • tests/test_pysqa_subprocess.py (2 hunks)
⏰ Context from checks skipped due to timeout of 90000ms (3)
  • GitHub Check: unittest_win
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-mpich.yml)
  • GitHub Check: benchmark (ubuntu-latest, 3.13, .ci_support/environment-openmpi.yml)
🔇 Additional comments (1)
tests/test_pysqa_subprocess.py (1)

2-2: LGTM!

The import statement is correctly placed and specifically imports the function being tested.

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