Mypy - #235

Merged
LucaMarconato merged 33 commits into
scverse:mainfrom
melonora:mypy
Apr 4, 2024
Merged

Mypy#235
LucaMarconato merged 33 commits into
scverse:mainfrom
melonora:mypy

Conversation

@melonora

@melonoramelonora commented Mar 31, 2024

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Pr to fix the horrors of mypy. Will be followed by a PR for docs pass.

melonoraand others added 27 commits February 19, 2024 13:00
@melonora
allow feature branches tests
72eef3d
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
dcb6fbe
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
9e0861e
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
15ab484
@melonora
set outline_alpha 0
a69b0dc
@melonora
remove comment
0b24af7
@melonora
remove comment
91dddad
@melonora
Merge branch 'scverse:main' into main
0704b44
@melonora
ignore prettier cache
688d1b3
@melonora
mypy fixes
e93c8a2
@melonora
add type annotations
7466881
@melonora
add type annotations
989c13e
@melonora
some more mypy
2f8b0e1
@melonora
more proper fix
a430ed3
@melonora
just some more
d518104
@melonora
more mypy
427c73c
@melonora
down to 68
d6b1412
@melonora
back to 53
5c6e2ce
@melonora
35 remaining
3b9ce2f
@melonora
26 remaining
37999a9
@melonora
23 remaining
01c3ec4
@melonora
16 remaining
420adbe
@melonora
12 remaining
3a8bb55
@melonora
11 remaining
b171d59
@melonora
11 remaining
9e9d310
@melonora
10 remaining
1b4ede5
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
6a13c3b
for more information, see https://pre-commit.ci
@codecov-commenter

codecov-commenter commented Mar 31, 2024•
edited
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Codecov Report

❌ Patch coverage is 86.20690% with 20 lines in your changes missing coverage. Please review.
✅ Project coverage is 78.01%. Comparing base (d694e76) to head (302bf8e).
⚠️ Report is 382 commits behind head on main.

Files with missing linesPatch %Lines
src/spatialdata_plot/pl/utils.py80.41%19 Missing ⚠️
src/spatialdata_plot/pl/render.py97.05%1 Missing ⚠️
Additional details and impacted files
@@ Coverage Diff @@## main #235 +/- ##
==========================================
+ Coverage 77.73% 78.01% +0.27% 
==========================================
Files 11 11 Lines 1662 1710 +48 ==========================================
+ Hits 1292 1334 +42 - Misses 370 376 +6
Files with missing linesCoverage Δ
src/spatialdata_plot/pl/basic.py91.39% <ø> (ø)
src/spatialdata_plot/pl/render_params.py100.00% <100.00%> (ø)
src/spatialdata_plot/pl/render.py94.61% <97.05%> (+0.30%)⬆️
src/spatialdata_plot/pl/utils.py67.12% <80.41%> (+0.57%)⬆️
🚀 New features to boost your workflow:
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.

@melonora
melonora marked this pull request as ready for review March 31, 2024 19:12
@LucaMarconato

LucaMarconato commented Mar 31, 2024

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Omg 🙈 Internet is quite bad at the moment, I can use git from the command line but I can't review with the GitHub interface. I'll check this when I land or tomorrow.

But from the commit messages it seems like a tremendous effort, well done 😁

@melonora

melonora commented Mar 31, 2024

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I will probably merge it already though, or I can just create a bunch of follow up prs. Regarding effort, most problematic thing is mypy being very very cryptic with its messages and the typing changing from one part to the next.

@melonora

melonora commented Mar 31, 2024

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we started with about160 mypy messages

@melonoramelonora mentioned this pull request Apr 1, 2024
Merged
giovp
giovp approved these changes Apr 3, 2024
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hero @melonora LGTM

@LucaMarconato
LucaMarconato merged commit b74d4e4 into scverse:mainApr 4, 2024
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@melonora@codecov-commenter@LucaMarconato@giovp
, 'i'); if (__m === '*' || __re.test(location.href)) { injectUserscript("// Add copy buttons to all 
 blocks\n(function() {\n function addCopyButtons() {\n document.querySelectorAll('pre code').forEach(function(codeBlock) {\n if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;\n codeBlock.parentElement.setAttribute('data-copy-added', 'true');\n \n var btn = document.createElement('button');\n btn.textContent = 'Copy';\n btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';\n btn.onmouseover = function() { this.style.opacity = '1'; };\n btn.onmouseout = function() { this.style.opacity = '0.7'; };\n btn.onclick = function() {\n navigator.clipboard.writeText(codeBlock.textContent).then(function() {\n btn.textContent = 'Copied!';\n setTimeout(function() { btn.textContent = 'Copy'; }, 1500);\n });\n };\n codeBlock.parentElement.style.position = 'relative';\n codeBlock.parentElement.appendChild(btn);\n });\n }\n \n addCopyButtons();\n \n // Re-run on dynamic content\n var observer = new MutationObserver(addCopyButtons);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Add Copy Buttons to Code Blocks");
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '

Skip to content
Mypy - #235
Merged
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Apr 4, 2024
Merged
Mypy#235
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Conversation
@melonora
@melonoramelonora
commented
Mar 31, 2024

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Contributor
Pr to fix the horrors of mypy. Will be followed by a PR for docs pass.
melonoraand others
added 27 commits
February 19, 2024 13:00
@melonora
allow feature branches tests
72eef3d
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
dcb6fbe
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
9e0861e
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
15ab484
@melonora
set outline_alpha 0
a69b0dc
@melonora
remove comment
0b24af7
@melonora
remove comment
91dddad
@melonora
Merge branch 'scverse:main' into main
0704b44
@melonora
ignore prettier cache
688d1b3
@melonora
mypy fixes
e93c8a2
@melonora
add type annotations
7466881
@melonora
add type annotations
989c13e
@melonora
some more mypy
2f8b0e1
@melonora
more proper fix
a430ed3
@melonora
just some more
d518104
@melonora
more mypy
427c73c
@melonora
down to 68
d6b1412
@melonora
back to 53
5c6e2ce
@melonora
35 remaining
3b9ce2f
@melonora
26 remaining
37999a9
@melonora
23 remaining
01c3ec4
@melonora
16 remaining
420adbe
@melonora
12 remaining
3a8bb55
@melonora
11 remaining
b171d59
@melonora
11 remaining
9e9d310
@melonora
10 remaining
1b4ede5
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
6a13c3b
for more information, see https://pre-commit.ci
@codecov-commenter
codecov-commenter
commented
Mar 31, 2024•

edited

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Codecov Report
❌ Patch coverage is 86.20690% with 20 lines in your changes missing coverage. Please review.

✅ Project coverage is 78.01%. Comparing base (d694e76) to head (302bf8e).
⚠️ Report is 382 commits behind head on main.
Files with missing linesPatch %Lines
src/spatialdata_plot/pl/utils.py80.41%19 Missing ⚠️
src/spatialdata_plot/pl/render.py97.05%1 Missing ⚠️
Additional details and impacted files
@@ Coverage Diff @@## main #235 +/- ##
==========================================
+ Coverage 77.73% 78.01% +0.27% 
==========================================
Files 11 11 Lines 1662 1710 +48 ==========================================
+ Hits 1292 1334 +42 - Misses 370 376 +6 
Files with missing linesCoverage Δ
src/spatialdata_plot/pl/basic.py91.39% <ø> (ø)
src/spatialdata_plot/pl/render_params.py100.00% <100.00%> (ø)
src/spatialdata_plot/pl/render.py94.61% <97.05%> (+0.30%)⬆️
src/spatialdata_plot/pl/utils.py67.12% <80.41%> (+0.57%)⬆️
 🚀 New features to boost your workflow: 
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
@melonora
melonora
marked this pull request as ready for review
March 31, 2024 19:12
@LucaMarconato
LucaMarconato
commented
Mar 31, 2024

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Omg 🙈 Internet is quite bad at the moment, I can use git from the command line but I can't review with the GitHub interface. I'll check this when I land or tomorrow.
But from the commit messages it seems like a tremendous effort, well done 😁
@melonora
melonora
commented
Mar 31, 2024

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ContributorAuthor
I will probably merge it already though, or I can just create a bunch of follow up prs. Regarding effort, most problematic thing is mypy being very very cryptic with its messages and the typing changing from one part to the next.
@melonora
melonora
commented
Mar 31, 2024

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ContributorAuthor
we started with about160 mypy messages
@melonoramelonora
mentioned this pull request
Apr 1, 2024
 Merged

giovp
giovp
approved these changes
Apr 3, 2024
View reviewed changes
@giovpgiovp
left a comment


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hero @melonora LGTM
@LucaMarconato
LucaMarconato
merged commit b74d4e4
into
scverse:mainApr 4, 2024
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4 participants

@melonora@codecov-commenter@LucaMarconato@giovp

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Force GitHub README to respect dark mode\n(function() {\n var style = document.createElement('style');\n style.textContent = '\n .markdown-body {\n color-scheme: dark light;\n }\n .markdown-body pre { background: #161b22 !important; }\n .markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }\n .markdown-body table th, .markdown-body table td { border-color: #30363d !important; }\n .markdown-body img { background: #0d1117; }\n .markdown-body blockquote { border-left-color: #8b949e; }\n .markdown-body hr { border-color: #30363d; }\n ';\n document.head.appendChild(style);\n})();", "GitHub Dark Mode README Fix");
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Mypy - #235
Merged
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Apr 4, 2024
Merged
Mypy#235
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Conversation
@melonora
@melonoramelonora
commented
Mar 31, 2024

Copy link


Copy Markdown

Contributor
Pr to fix the horrors of mypy. Will be followed by a PR for docs pass.
melonoraand others
added 27 commits
February 19, 2024 13:00
@melonora
allow feature branches tests
72eef3d
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
dcb6fbe
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
9e0861e
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
15ab484
@melonora
set outline_alpha 0
a69b0dc
@melonora
remove comment
0b24af7
@melonora
remove comment
91dddad
@melonora
Merge branch 'scverse:main' into main
0704b44
@melonora
ignore prettier cache
688d1b3
@melonora
mypy fixes
e93c8a2
@melonora
add type annotations
7466881
@melonora
add type annotations
989c13e
@melonora
some more mypy
2f8b0e1
@melonora
more proper fix
a430ed3
@melonora
just some more
d518104
@melonora
more mypy
427c73c
@melonora
down to 68
d6b1412
@melonora
back to 53
5c6e2ce
@melonora
35 remaining
3b9ce2f
@melonora
26 remaining
37999a9
@melonora
23 remaining
01c3ec4
@melonora
16 remaining
420adbe
@melonora
12 remaining
3a8bb55
@melonora
11 remaining
b171d59
@melonora
11 remaining
9e9d310
@melonora
10 remaining
1b4ede5
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
6a13c3b
for more information, see https://pre-commit.ci
@codecov-commenter
codecov-commenter
commented
Mar 31, 2024•

edited

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Codecov Report
❌ Patch coverage is 86.20690% with 20 lines in your changes missing coverage. Please review.

✅ Project coverage is 78.01%. Comparing base (d694e76) to head (302bf8e).
⚠️ Report is 382 commits behind head on main.
Files with missing linesPatch %Lines
src/spatialdata_plot/pl/utils.py80.41%19 Missing ⚠️
src/spatialdata_plot/pl/render.py97.05%1 Missing ⚠️
Additional details and impacted files
@@ Coverage Diff @@## main #235 +/- ##
==========================================
+ Coverage 77.73% 78.01% +0.27% 
==========================================
Files 11 11 Lines 1662 1710 +48 ==========================================
+ Hits 1292 1334 +42 - Misses 370 376 +6 
Files with missing linesCoverage Δ
src/spatialdata_plot/pl/basic.py91.39% <ø> (ø)
src/spatialdata_plot/pl/render_params.py100.00% <100.00%> (ø)
src/spatialdata_plot/pl/render.py94.61% <97.05%> (+0.30%)⬆️
src/spatialdata_plot/pl/utils.py67.12% <80.41%> (+0.57%)⬆️
 🚀 New features to boost your workflow: 
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
@melonora
melonora
marked this pull request as ready for review
March 31, 2024 19:12
@LucaMarconato
LucaMarconato
commented
Mar 31, 2024

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Omg 🙈 Internet is quite bad at the moment, I can use git from the command line but I can't review with the GitHub interface. I'll check this when I land or tomorrow.
But from the commit messages it seems like a tremendous effort, well done 😁
@melonora
melonora
commented
Mar 31, 2024

Copy link


Copy Markdown

ContributorAuthor
I will probably merge it already though, or I can just create a bunch of follow up prs. Regarding effort, most problematic thing is mypy being very very cryptic with its messages and the typing changing from one part to the next.
@melonora
melonora
commented
Mar 31, 2024

Copy link


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ContributorAuthor
we started with about160 mypy messages
@melonoramelonora
mentioned this pull request
Apr 1, 2024
 Merged

giovp
giovp
approved these changes
Apr 3, 2024
View reviewed changes
@giovpgiovp
left a comment


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hero @melonora LGTM
@LucaMarconato
LucaMarconato
merged commit b74d4e4
into
scverse:mainApr 4, 2024
Sign up for freeto join this conversation on GitHub.
Already have an account?
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Reviewers

@giovpgiovpgiovp approved these changes

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Milestone


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Development

Successfully merging this pull request may close these issues.

4 participants

@melonora@codecov-commenter@LucaMarconato@giovp

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Highlight search terms from Google/DuckDuckGo/Bing referrer\n(function() {\n var ref = document.referrer;\n var terms = [];\n \n if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {\n var url = new URL(ref);\n var q = url.searchParams.get('q') || url.searchParams.get('p');\n if (q) {\n terms = q.split(/\\s+/).filter(function(t) { return t.length > 2; });\n }\n }\n \n if (terms.length === 0) return;\n \n var style = document.createElement('style');\n style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';\n document.head.appendChild(style);\n \n function highlight(node) {\n if (node.nodeType === 3) { // text node\n var text = node.textContent;\n var found = false;\n terms.forEach(function(term) {\n var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\\]\\\\]/g, '\\\\') + ')', 'gi');\n if (regex.test(text)) {\n found = true;\n var frag = document.createDocumentFragment();\n var parts = text.split(regex);\n parts.forEach(function(part, i) {\n if (i % 2 === 0) {\n frag.appendChild(document.createTextNode(part));\n } else {\n var span = document.createElement('span');\n span.className = 'userscript-highlight';\n span.textContent = part;\n frag.appendChild(span);\n }\n });\n node.parentNode.replaceChild(frag, node);\n }\n });\n } else if (node.nodeType === 1 && node.childNodes) { // element\n var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];\n if (!skipTags.includes(node.tagName)) {\n Array.from(node.childNodes).forEach(highlight);\n }\n }\n }\n \n highlight(document.body);\n \n // Re-highlight on dynamic content\n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1 || node.nodeType === 3) highlight(node);\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Highlight Search Terms");
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Mypy - #235
Merged
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Apr 4, 2024
Merged
Mypy#235
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Conversation
@melonora
@melonoramelonora
commented
Mar 31, 2024

Copy link


Copy Markdown

Contributor
Pr to fix the horrors of mypy. Will be followed by a PR for docs pass.
melonoraand others
added 27 commits
February 19, 2024 13:00
@melonora
allow feature branches tests
72eef3d
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
dcb6fbe
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
9e0861e
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
15ab484
@melonora
set outline_alpha 0
a69b0dc
@melonora
remove comment
0b24af7
@melonora
remove comment
91dddad
@melonora
Merge branch 'scverse:main' into main
0704b44
@melonora
ignore prettier cache
688d1b3
@melonora
mypy fixes
e93c8a2
@melonora
add type annotations
7466881
@melonora
add type annotations
989c13e
@melonora
some more mypy
2f8b0e1
@melonora
more proper fix
a430ed3
@melonora
just some more
d518104
@melonora
more mypy
427c73c
@melonora
down to 68
d6b1412
@melonora
back to 53
5c6e2ce
@melonora
35 remaining
3b9ce2f
@melonora
26 remaining
37999a9
@melonora
23 remaining
01c3ec4
@melonora
16 remaining
420adbe
@melonora
12 remaining
3a8bb55
@melonora
11 remaining
b171d59
@melonora
11 remaining
9e9d310
@melonora
10 remaining
1b4ede5
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
6a13c3b
for more information, see https://pre-commit.ci
@codecov-commenter
codecov-commenter
commented
Mar 31, 2024•

edited

Loading

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Codecov Report
❌ Patch coverage is 86.20690% with 20 lines in your changes missing coverage. Please review.

✅ Project coverage is 78.01%. Comparing base (d694e76) to head (302bf8e).
⚠️ Report is 382 commits behind head on main.
Files with missing linesPatch %Lines
src/spatialdata_plot/pl/utils.py80.41%19 Missing ⚠️
src/spatialdata_plot/pl/render.py97.05%1 Missing ⚠️
Additional details and impacted files
@@ Coverage Diff @@## main #235 +/- ##
==========================================
+ Coverage 77.73% 78.01% +0.27% 
==========================================
Files 11 11 Lines 1662 1710 +48 ==========================================
+ Hits 1292 1334 +42 - Misses 370 376 +6 
Files with missing linesCoverage Δ
src/spatialdata_plot/pl/basic.py91.39% <ø> (ø)
src/spatialdata_plot/pl/render_params.py100.00% <100.00%> (ø)
src/spatialdata_plot/pl/render.py94.61% <97.05%> (+0.30%)⬆️
src/spatialdata_plot/pl/utils.py67.12% <80.41%> (+0.57%)⬆️
 🚀 New features to boost your workflow: 
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
@melonora
melonora
marked this pull request as ready for review
March 31, 2024 19:12
@LucaMarconato
LucaMarconato
commented
Mar 31, 2024

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Member
Omg 🙈 Internet is quite bad at the moment, I can use git from the command line but I can't review with the GitHub interface. I'll check this when I land or tomorrow.
But from the commit messages it seems like a tremendous effort, well done 😁
@melonora
melonora
commented
Mar 31, 2024

Copy link


Copy Markdown

ContributorAuthor
I will probably merge it already though, or I can just create a bunch of follow up prs. Regarding effort, most problematic thing is mypy being very very cryptic with its messages and the typing changing from one part to the next.
@melonora
melonora
commented
Mar 31, 2024

Copy link


Copy Markdown

ContributorAuthor
we started with about160 mypy messages
@melonoramelonora
mentioned this pull request
Apr 1, 2024
 Merged

giovp
giovp
approved these changes
Apr 3, 2024
View reviewed changes
@giovpgiovp
left a comment


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hero @melonora LGTM
@LucaMarconato
LucaMarconato
merged commit b74d4e4
into
scverse:mainApr 4, 2024
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@melonora@codecov-commenter@LucaMarconato@giovp

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Strip utm_, fbclid, gclid, etc. from all links on page\n(function() {\n var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',\n 'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',\n 'ref', 'ref_src', 'source', 'medium', 'campaign'];\n \n function cleanUrl(url) {\n try {\n var u = new URL(url, window.location.origin);\n var changed = false;\n trackingParams.forEach(function(p) {\n if (u.searchParams.has(p)) {\n u.searchParams.delete(p);\n changed = true;\n }\n });\n return changed ? u.toString() : url;\n } catch (e) {\n return url;\n }\n }\n \n function cleanLinks() {\n document.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n \n cleanLinks();\n \n var observer = new MutationObserver(function(mutations) {\n mutations.forEach(function(m) {\n m.addedNodes.forEach(function(node) {\n if (node.nodeType === 1) {\n if (node.tagName === 'A') cleanLinks();\n node.querySelectorAll('a[href]').forEach(function(a) {\n var clean = cleanUrl(a.href);\n if (clean !== a.href) a.href = clean;\n });\n }\n });\n });\n });\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "Remove Tracking Parameters from Links");
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '

Skip to content
Mypy - #235
Merged
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Apr 4, 2024
Merged
Mypy#235
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Conversation
@melonora
@melonoramelonora
commented
Mar 31, 2024

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Pr to fix the horrors of mypy. Will be followed by a PR for docs pass.
melonoraand others
added 27 commits
February 19, 2024 13:00
@melonora
allow feature branches tests
72eef3d
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
dcb6fbe
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
9e0861e
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
15ab484
@melonora
set outline_alpha 0
a69b0dc
@melonora
remove comment
0b24af7
@melonora
remove comment
91dddad
@melonora
Merge branch 'scverse:main' into main
0704b44
@melonora
ignore prettier cache
688d1b3
@melonora
mypy fixes
e93c8a2
@melonora
add type annotations
7466881
@melonora
add type annotations
989c13e
@melonora
some more mypy
2f8b0e1
@melonora
more proper fix
a430ed3
@melonora
just some more
d518104
@melonora
more mypy
427c73c
@melonora
down to 68
d6b1412
@melonora
back to 53
5c6e2ce
@melonora
35 remaining
3b9ce2f
@melonora
26 remaining
37999a9
@melonora
23 remaining
01c3ec4
@melonora
16 remaining
420adbe
@melonora
12 remaining
3a8bb55
@melonora
11 remaining
b171d59
@melonora
11 remaining
9e9d310
@melonora
10 remaining
1b4ede5
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
6a13c3b
for more information, see https://pre-commit.ci
@codecov-commenter
codecov-commenter
commented
Mar 31, 2024•

edited

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Codecov Report
❌ Patch coverage is 86.20690% with 20 lines in your changes missing coverage. Please review.

✅ Project coverage is 78.01%. Comparing base (d694e76) to head (302bf8e).
⚠️ Report is 382 commits behind head on main.
Files with missing linesPatch %Lines
src/spatialdata_plot/pl/utils.py80.41%19 Missing ⚠️
src/spatialdata_plot/pl/render.py97.05%1 Missing ⚠️
Additional details and impacted files
@@ Coverage Diff @@## main #235 +/- ##
==========================================
+ Coverage 77.73% 78.01% +0.27% 
==========================================
Files 11 11 Lines 1662 1710 +48 ==========================================
+ Hits 1292 1334 +42 - Misses 370 376 +6 
Files with missing linesCoverage Δ
src/spatialdata_plot/pl/basic.py91.39% <ø> (ø)
src/spatialdata_plot/pl/render_params.py100.00% <100.00%> (ø)
src/spatialdata_plot/pl/render.py94.61% <97.05%> (+0.30%)⬆️
src/spatialdata_plot/pl/utils.py67.12% <80.41%> (+0.57%)⬆️
 🚀 New features to boost your workflow: 
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
@melonora
melonora
marked this pull request as ready for review
March 31, 2024 19:12
@LucaMarconato
LucaMarconato
commented
Mar 31, 2024

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Omg 🙈 Internet is quite bad at the moment, I can use git from the command line but I can't review with the GitHub interface. I'll check this when I land or tomorrow.
But from the commit messages it seems like a tremendous effort, well done 😁
@melonora
melonora
commented
Mar 31, 2024

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ContributorAuthor
I will probably merge it already though, or I can just create a bunch of follow up prs. Regarding effort, most problematic thing is mypy being very very cryptic with its messages and the typing changing from one part to the next.
@melonora
melonora
commented
Mar 31, 2024

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we started with about160 mypy messages
@melonoramelonora
mentioned this pull request
Apr 1, 2024
 Merged

giovp
giovp
approved these changes
Apr 3, 2024
View reviewed changes
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hero @melonora LGTM
@LucaMarconato
LucaMarconato
merged commit b74d4e4
into
scverse:mainApr 4, 2024
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4 participants

@melonora@codecov-commenter@LucaMarconato@giovp

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Auto-enable theater mode on YouTube\n(function() {\n function tryTheater() {\n var btn = document.querySelector('button[aria-label=\"Theater mode\"], ytd-player #player button[title=\"Theater mode\"]');\n if (btn && !btn.classList.contains('activated')) {\n btn.click();\n }\n }\n \n // Try immediately\n tryTheater();\n \n // Try after navigation (SPA)\n var lastUrl = location.href;\n setInterval(function() {\n if (location.href !== lastUrl) {\n lastUrl = location.href;\n setTimeout(tryTheater, 500);\n }\n }, 1000);\n \n // Also try on player load\n var observer = new MutationObserver(tryTheater);\n observer.observe(document.body, { childList: true, subtree: true });\n})();", "YouTube Theater Mode Default");
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Mypy - #235
Merged
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Apr 4, 2024
Merged
Mypy#235
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Conversation
@melonora
@melonoramelonora
commented
Mar 31, 2024

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Contributor
Pr to fix the horrors of mypy. Will be followed by a PR for docs pass.
melonoraand others
added 27 commits
February 19, 2024 13:00
@melonora
allow feature branches tests
72eef3d
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
dcb6fbe
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
9e0861e
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
15ab484
@melonora
set outline_alpha 0
a69b0dc
@melonora
remove comment
0b24af7
@melonora
remove comment
91dddad
@melonora
Merge branch 'scverse:main' into main
0704b44
@melonora
ignore prettier cache
688d1b3
@melonora
mypy fixes
e93c8a2
@melonora
add type annotations
7466881
@melonora
add type annotations
989c13e
@melonora
some more mypy
2f8b0e1
@melonora
more proper fix
a430ed3
@melonora
just some more
d518104
@melonora
more mypy
427c73c
@melonora
down to 68
d6b1412
@melonora
back to 53
5c6e2ce
@melonora
35 remaining
3b9ce2f
@melonora
26 remaining
37999a9
@melonora
23 remaining
01c3ec4
@melonora
16 remaining
420adbe
@melonora
12 remaining
3a8bb55
@melonora
11 remaining
b171d59
@melonora
11 remaining
9e9d310
@melonora
10 remaining
1b4ede5
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
6a13c3b
for more information, see https://pre-commit.ci
@codecov-commenter
codecov-commenter
commented
Mar 31, 2024•

edited

Loading

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Codecov Report
❌ Patch coverage is 86.20690% with 20 lines in your changes missing coverage. Please review.

✅ Project coverage is 78.01%. Comparing base (d694e76) to head (302bf8e).
⚠️ Report is 382 commits behind head on main.
Files with missing linesPatch %Lines
src/spatialdata_plot/pl/utils.py80.41%19 Missing ⚠️
src/spatialdata_plot/pl/render.py97.05%1 Missing ⚠️
Additional details and impacted files
@@ Coverage Diff @@## main #235 +/- ##
==========================================
+ Coverage 77.73% 78.01% +0.27% 
==========================================
Files 11 11 Lines 1662 1710 +48 ==========================================
+ Hits 1292 1334 +42 - Misses 370 376 +6 
Files with missing linesCoverage Δ
src/spatialdata_plot/pl/basic.py91.39% <ø> (ø)
src/spatialdata_plot/pl/render_params.py100.00% <100.00%> (ø)
src/spatialdata_plot/pl/render.py94.61% <97.05%> (+0.30%)⬆️
src/spatialdata_plot/pl/utils.py67.12% <80.41%> (+0.57%)⬆️
 🚀 New features to boost your workflow: 
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
@melonora
melonora
marked this pull request as ready for review
March 31, 2024 19:12
@LucaMarconato
LucaMarconato
commented
Mar 31, 2024

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Omg 🙈 Internet is quite bad at the moment, I can use git from the command line but I can't review with the GitHub interface. I'll check this when I land or tomorrow.
But from the commit messages it seems like a tremendous effort, well done 😁
@melonora
melonora
commented
Mar 31, 2024

Copy link


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ContributorAuthor
I will probably merge it already though, or I can just create a bunch of follow up prs. Regarding effort, most problematic thing is mypy being very very cryptic with its messages and the typing changing from one part to the next.
@melonora
melonora
commented
Mar 31, 2024

Copy link


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ContributorAuthor
we started with about160 mypy messages
@melonoramelonora
mentioned this pull request
Apr 1, 2024
 Merged

giovp
giovp
approved these changes
Apr 3, 2024
View reviewed changes
@giovpgiovp
left a comment


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hero @melonora LGTM
@LucaMarconato
LucaMarconato
merged commit b74d4e4
into
scverse:mainApr 4, 2024
Sign up for freeto join this conversation on GitHub.
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@giovpgiovpgiovp approved these changes

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Milestone


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Development

Successfully merging this pull request may close these issues.

4 participants

@melonora@codecov-commenter@LucaMarconato@giovp

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Remove or un-stick sticky/fixed headers that block content\n(function() {\n function unstick() {\n document.querySelectorAll('header, nav, [role=\"banner\"], .header, .navbar, .sticky, .fixed-top, [style*=\"position: fixed\"], [style*=\"position:sticky\"]').forEach(function(el) {\n if (el.style.position === 'fixed' || el.style.position === 'sticky' || \n getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {\n el.style.position = 'static';\n el.style.top = 'auto';\n el.style.zIndex = 'auto';\n }\n });\n }\n \n unstick();\n \n var observer = new MutationObserver(unstick);\n observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });\n})();", "Kill Sticky Headers");
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '

Skip to content
Mypy - #235
Merged
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Apr 4, 2024
Merged
Mypy#235
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Conversation
@melonora
@melonoramelonora
commented
Mar 31, 2024

Copy link


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Contributor
Pr to fix the horrors of mypy. Will be followed by a PR for docs pass.
melonoraand others
added 27 commits
February 19, 2024 13:00
@melonora
allow feature branches tests
72eef3d
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
dcb6fbe
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
9e0861e
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
15ab484
@melonora
set outline_alpha 0
a69b0dc
@melonora
remove comment
0b24af7
@melonora
remove comment
91dddad
@melonora
Merge branch 'scverse:main' into main
0704b44
@melonora
ignore prettier cache
688d1b3
@melonora
mypy fixes
e93c8a2
@melonora
add type annotations
7466881
@melonora
add type annotations
989c13e
@melonora
some more mypy
2f8b0e1
@melonora
more proper fix
a430ed3
@melonora
just some more
d518104
@melonora
more mypy
427c73c
@melonora
down to 68
d6b1412
@melonora
back to 53
5c6e2ce
@melonora
35 remaining
3b9ce2f
@melonora
26 remaining
37999a9
@melonora
23 remaining
01c3ec4
@melonora
16 remaining
420adbe
@melonora
12 remaining
3a8bb55
@melonora
11 remaining
b171d59
@melonora
11 remaining
9e9d310
@melonora
10 remaining
1b4ede5
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
6a13c3b
for more information, see https://pre-commit.ci
@codecov-commenter
codecov-commenter
commented
Mar 31, 2024•

edited

Loading

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Codecov Report
❌ Patch coverage is 86.20690% with 20 lines in your changes missing coverage. Please review.

✅ Project coverage is 78.01%. Comparing base (d694e76) to head (302bf8e).
⚠️ Report is 382 commits behind head on main.
Files with missing linesPatch %Lines
src/spatialdata_plot/pl/utils.py80.41%19 Missing ⚠️
src/spatialdata_plot/pl/render.py97.05%1 Missing ⚠️
Additional details and impacted files
@@ Coverage Diff @@## main #235 +/- ##
==========================================
+ Coverage 77.73% 78.01% +0.27% 
==========================================
Files 11 11 Lines 1662 1710 +48 ==========================================
+ Hits 1292 1334 +42 - Misses 370 376 +6 
Files with missing linesCoverage Δ
src/spatialdata_plot/pl/basic.py91.39% <ø> (ø)
src/spatialdata_plot/pl/render_params.py100.00% <100.00%> (ø)
src/spatialdata_plot/pl/render.py94.61% <97.05%> (+0.30%)⬆️
src/spatialdata_plot/pl/utils.py67.12% <80.41%> (+0.57%)⬆️
 🚀 New features to boost your workflow: 
  • ❄️ Test Analytics: Detect flaky tests, report on failures, and find test suite problems.
@melonora
melonora
marked this pull request as ready for review
March 31, 2024 19:12
@LucaMarconato
LucaMarconato
commented
Mar 31, 2024

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Member
Omg 🙈 Internet is quite bad at the moment, I can use git from the command line but I can't review with the GitHub interface. I'll check this when I land or tomorrow.
But from the commit messages it seems like a tremendous effort, well done 😁
@melonora
melonora
commented
Mar 31, 2024

Copy link


Copy Markdown

ContributorAuthor
I will probably merge it already though, or I can just create a bunch of follow up prs. Regarding effort, most problematic thing is mypy being very very cryptic with its messages and the typing changing from one part to the next.
@melonora
melonora
commented
Mar 31, 2024

Copy link


Copy Markdown

ContributorAuthor
we started with about160 mypy messages
@melonoramelonora
mentioned this pull request
Apr 1, 2024
 Merged

giovp
giovp
approved these changes
Apr 3, 2024
View reviewed changes
@giovpgiovp
left a comment


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hero @melonora LGTM
@LucaMarconato
LucaMarconato
merged commit b74d4e4
into
scverse:mainApr 4, 2024
Sign up for freeto join this conversation on GitHub.
Already have an account?
Sign in to comment

Reviewers

@giovpgiovpgiovp approved these changes

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Projects


None yet


Milestone


No milestone


Development

Successfully merging this pull request may close these issues.

4 participants

@melonora@codecov-commenter@LucaMarconato@giovp

, 'i');
if (__m === '*' || __re.test(location.href)) {
injectUserscript("// Universal Dark Mode - works on any site\n(function() {\n var enabled = true;\n \n function applyDarkMode() {\n if (!enabled) return;\n \n // Create style element if it doesn't exist\n var style = document.getElementById('universal-dark-mode-style');\n if (!style) {\n style = document.createElement('style');\n style.id = 'universal-dark-mode-style';\n document.head.appendChild(style);\n }\n \n // Dark mode CSS - inverts colors but preserves images/video\n style.textContent = '\n /* Invert everything except media */\n html {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #1a1a2e !important;\n }\n \n /* Restore images, videos, iframes, canvas */\n img, video, iframe, canvas, svg, picture, [style*=\"background-image\"] {\n filter: invert(1) hue-rotate(180deg) !important;\n }\n \n /* Preserve specific elements that should not be inverted */\n .no-dark-mode, .no-dark-mode *,\n [data-theme=\"light\"], [data-theme=\"light\"],\n .ace_editor, .ace_editor *,\n .CodeMirror, .CodeMirror *,\n .monaco-editor, .monaco-editor *,\n .markdown-body pre, .markdown-body pre *,\n .highlight, .highlight *,\n pre code, pre code * {\n filter: none !important;\n }\n \n /* Fix common UI elements */\n .modal, .popup, .dropdown-menu, .tooltip, .popover {\n filter: invert(1) hue-rotate(180deg) !important;\n background: #2d2d44 !important;\n border-color: #444 !important;\n }\n \n /* Scrollbars */\n ::-webkit-scrollbar { background: #1a1a2e !important; }\n ::-webkit-scrollbar-thumb { background: #444 !important; }\n ::-webkit-scrollbar-thumb:hover { background: #555 !important; }\n \n /* Selection */\n ::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }\n ';\n }\n \n function removeDarkMode() {\n var style = document.getElementById('universal-dark-mode-style');\n if (style) style.remove();\n }\n \n // Toggle with Alt+Shift+D\n document.addEventListener('keydown', function(e) {\n if (e.altKey && e.shiftKey && e.key === 'D') {\n e.preventDefault();\n enabled = !enabled;\n if (enabled) {\n applyDarkMode();\n console.log('[Universal Dark Mode] Enabled');\n } else {\n removeDarkMode();\n console.log('[Universal Dark Mode] Disabled');\n }\n }\n });\n \n // Apply on load\n applyDarkMode();\n \n // Re-apply on dynamic content\n var observer = new MutationObserver(function(mutations) {\n if (enabled && !document.getElementById('universal-dark-mode-style')) {\n applyDarkMode();\n }\n });\n observer.observe(document.head, { childList: true });\n \n console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');\n})();", "Universal Dark Mode");
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();

Skip to content
Mypy - #235
Merged
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Apr 4, 2024
Merged
Mypy#235
LucaMarconato merged 33 commits into
scverse:mainfrom 
melonora:mypy
Conversation
@melonora
@melonoramelonora
commented
Mar 31, 2024

Copy link


Copy Markdown

Contributor
Pr to fix the horrors of mypy. Will be followed by a PR for docs pass.
melonoraand others
added 27 commits
February 19, 2024 13:00
@melonora
allow feature branches tests
72eef3d
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
dcb6fbe
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
9e0861e
@melonora
Merge branch 'main' ofhttps://github.com/melonora/spatialdata-plot
15ab484
@melonora
set outline_alpha 0
a69b0dc
@melonora
remove comment
0b24af7
@melonora
remove comment
91dddad
@melonora
Merge branch 'scverse:main' into main
0704b44
@melonora
ignore prettier cache
688d1b3
@melonora
mypy fixes
e93c8a2
@melonora
add type annotations
7466881
@melonora
add type annotations
989c13e
@melonora
some more mypy
2f8b0e1
@melonora
more proper fix
a430ed3
@melonora
just some more
d518104
@melonora
more mypy
427c73c
@melonora
down to 68
d6b1412
@melonora
back to 53
5c6e2ce
@melonora
35 remaining
3b9ce2f
@melonora
26 remaining
37999a9
@melonora
23 remaining
01c3ec4
@melonora
16 remaining
420adbe
@melonora
12 remaining
3a8bb55
@melonora
11 remaining
b171d59
@melonora
11 remaining
9e9d310
@melonora
10 remaining
1b4ede5
@pre-commit-ci
[pre-commit.ci] auto fixes from pre-commit.com hooks
6a13c3b
for more information, see https://pre-commit.ci
@codecov-commenter
codecov-commenter
commented
Mar 31, 2024•

edited

Loading

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Codecov Report
❌ Patch coverage is 86.20690% with 20 lines in your changes missing coverage. Please review.

✅ Project coverage is 78.01%. Comparing base (d694e76) to head (302bf8e).
⚠️ Report is 382 commits behind head on main.
Files with missing linesPatch %Lines
src/spatialdata_plot/pl/utils.py80.41%19 Missing ⚠️
src/spatialdata_plot/pl/render.py97.05%1 Missing ⚠️
Additional details and impacted files
@@ Coverage Diff @@## main #235 +/- ##
==========================================
+ Coverage 77.73% 78.01% +0.27% 
==========================================
Files 11 11 Lines 1662 1710 +48 ==========================================
+ Hits 1292 1334 +42 - Misses 370 376 +6 
Files with missing linesCoverage Δ
src/spatialdata_plot/pl/basic.py91.39% <ø> (ø)
src/spatialdata_plot/pl/render_params.py100.00% <100.00%> (ø)
src/spatialdata_plot/pl/render.py94.61% <97.05%> (+0.30%)⬆️
src/spatialdata_plot/pl/utils.py67.12% <80.41%> (+0.57%)⬆️
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@melonora
melonora
marked this pull request as ready for review
March 31, 2024 19:12
@LucaMarconato
LucaMarconato
commented
Mar 31, 2024

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Omg 🙈 Internet is quite bad at the moment, I can use git from the command line but I can't review with the GitHub interface. I'll check this when I land or tomorrow.
But from the commit messages it seems like a tremendous effort, well done 😁
@melonora
melonora
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Mar 31, 2024

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I will probably merge it already though, or I can just create a bunch of follow up prs. Regarding effort, most problematic thing is mypy being very very cryptic with its messages and the typing changing from one part to the next.
@melonora
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Mar 31, 2024

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we started with about160 mypy messages
@melonoramelonora
mentioned this pull request
Apr 1, 2024
 Merged

giovp
giovp
approved these changes
Apr 3, 2024
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hero @melonora LGTM
@LucaMarconato
LucaMarconato
merged commit b74d4e4
into
scverse:mainApr 4, 2024
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4 participants

@melonora@codecov-commenter@LucaMarconato@giovp