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coordinate system of xenium explorer and stada are inconsistent

Status: Open.

#1194In scverse/spatialdata;

· songlyzz opened on Aug 28, 2026

Investigate if ome-zarr-py Labels class __init__ leads to performance implications

performance 🚀

Status: Open.

#1190In scverse/spatialdata;

· LucaMarconato opened on Aug 21, 2026

No sharding configuration exposed for tables

Status: Open.

#1178In scverse/spatialdata;

· LucaMarconato opened on Aug 18, 2026

Bounding box query APIs slowed down by join operations

Status: Open.

#1177In scverse/spatialdata;

· LucaMarconato opened on Aug 18, 2026

Invalid "selection" values in "read_zarr()" should raise an error

Status: Open.

#1172In scverse/spatialdata;

· AlbertoFabbri93 opened on Aug 3, 2026

Transformation on large image results in very large chunks

Status: Open.

#1161In scverse/spatialdata;

· yyi17 opened on Jul 8, 2026

Add SPEC-0 badge

Status: Open.

#1153In scverse/spatialdata;

· LucaMarconato opened on Jun 22, 2026

Missing values in AnnData .uns DataFrame become string "nan" after SpatialData Zarr round trip

needs: triage

question ❓Further information is requestedFurther information is requested

Status: Open.

#1152In scverse/spatialdata;

· AlbertoFabbri93 opened on Jun 22, 2026

Output spatially ordered anndata object

Status: Open.

#1145In scverse/spatialdata;

· ilan-gold opened on Jun 17, 2026

Allow customization of suffix separator when concatenating SpatialData objects

Status: Open.

#1139In scverse/spatialdata;

· AlbertoFabbri93 opened on May 29, 2026

Proseg v3 transcript dataframe issue

Status: Open.

#1137In scverse/spatialdata;

· niklasmueboe opened on May 22, 2026

attributes/ome/omero/channels/label gets incorrectly coerced to integer

Status: Open.

#1136In scverse/spatialdata;

· Bisaloo opened on May 21, 2026