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Pull requests: scverse/spatialdata

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Pull requests list

Adopt the scverse cookiecutter template
#1197 opened Aug 29, 2026 by ZethsonMemberLoading…
8
test: document join scoping for a region absent from the query
#1195 opened Aug 28, 2026 by jan-glxCollaborator • Draft
1
NGFF v06 transformations
#1182 opened Aug 19, 2026 by Tomaz-VieiraCollaborator • Draft
1 task
77
fix: write OME channel labels as strings
#1168 opened Jul 25, 2026 by stanbot8ContributorLoading…
1
1
fix: support raster labels above uint16
#1167 opened Jul 24, 2026 by stanbot8ContributorLoading…
1
1
feat: add opt-in rasterization tiles
#1166 opened Jul 24, 2026 by stanbot8ContributorLoading…
1
1
feat(centroids): add return_area + SpatialData persist to get_centroids
#1150 opened Jun 19, 2026 by timtreisMemberLoading…
24
Accept zipped zarr stores as an input for spatialdata.read_zarr(). Must also have ome-zarr-py ZarrLocation changes.
#1141 opened Jun 3, 2026 by pennycudaLoading…
3
Split SpatialData objects via deconcatenate()
#1124 opened May 11, 2026 by LucaMarconatoMemberLoading…
3
feat: generalize Zarr I/O in spatialdata to local and add remote (fsspec / UPath) backends remote ☁️
#1107 opened Apr 17, 2026 by selmanozleyenMemberLoading…
4 tasks
23
Support sharding through config and raster_write_kwargs
#1106 opened Apr 14, 2026 by melonoraCollaboratorLoading…
95
feat: Add lazy table loading via anndata.experimental.read_lazy
#1055 opened Jan 27, 2026 by TomatokeftesContributorLoading…
6 tasks done
4
Local cloud remote ☁️
#999 opened Oct 22, 2025 by sophiamaedlerLoading…
3
add remote support remote ☁️
#971 opened Aug 20, 2025 by melonoraCollaborator • Draft
3
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