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Using less space during construction - #211

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sarahet merged 5 commits into
seqan:lambda3from
SGSSGene:fix/less_space_construction
May 9, 2023
Merged

Using less space during construction#211
sarahet merged 5 commits into
seqan:lambda3from
SGSSGene:fix/less_space_construction

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@SGSSGene

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This updates the fmindex collection, which now uses less space, when constructing fm-indices

SGSSGeneand others added 3 commits May 3, 2023 16:41
- This also changes the way that a search with an reversed index is
working, so no reversing of the text is required anymore.
- Requires to set the numbers of thread used for suffix array
construction.
Co-authored-by: Hannes Hauswedell <h2+github.com@fsfe.org>
@SGSSGene
SGSSGeneforce-pushed the fix/less_space_construction branch from dc1c1c7 to 2196690CompareMay 8, 2023 08:57
@h-2

h-2 commented May 8, 2023

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@SGSSGene can we merge this from your POV?

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SGSSGene requested a review from h-2May 9, 2023 08:03
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SGSSGene marked this pull request as ready for review May 9, 2023 08:03
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Yes, this is good to go. if this PR is being merged, PR 208 - multithreading can also be closed, since this one includes it.

@SGSSGene
SGSSGeneforce-pushed the fix/less_space_construction branch from 3e5c65e to d8286aeCompareMay 9, 2023 08:59
@h-2

h-2 commented May 9, 2023

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Ah, I pushed the commits to the wrong branch of yours, but I see you have included them here now!

h-2
h-2 approved these changes May 9, 2023
@sarahet
sarahet merged commit 2453f18 into seqan:lambda3May 9, 2023
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3 participants

@SGSSGene@h-2@sarahet