Terminal-based plasmid map viewer, sequence editor, and cloning/mutagenesis workbench in pure Python
A universal infrastructure layer for generative biology
Software for predicting translation initiation rates in bacteria
nanoDNA-nanoROBOT-simulation: Open-source Python project for modeling and simulating DNA-based nanorobot behavior. 🧬🤖
A general Python framework for using hidden Markov models on binary trees or cell lineage trees.
An Intelligent Biomedical Semantic-Retrieval System
A command-line interface and biochemical pathway finder based on Kyoto Encyclopedia of Genes and Genomes (KEGG).
PathwayNet is a project based on Python and Bioinformatics. It tries to build up mathematic modes on simulating pathways of amino acid synthesis in E. coli.
Repository corresponding to the TFG 'Detection of the degree of diabetic retinopathy by means of convolutional networks' of the bachelor's degree in Bioengineering of the University of Burgos.
A Scalable Pipeline for Discovery of aaRS Mutants to Aid in Genetic Code Expansion.
A transformer-based masked language model for learning amino acid sequence representations. The model uses self-attention mechanisms with custom gating and incorporates protein features for enhanced sequence understanding. Trained using BERT-style masking on peptide sequences to learn contextual amino acid embeddings.
Modular AI assistant for bioengineering and ML workflows.
Introductory Python Workshops! Check out README for more info!
Repository for studying extraterrestrial plant life and ecosystems, exploring the potential for agriculture, bioengineering, and terraforming on celestial bodies across the cosmos.
Open-source desktop nanofactory + honest synthesizer thesis: an AI compiler turns a shape into an orderable DNA-origami recipe (scaffold + optimized staples + wet-lab protocol + 3D oxDNA), behind one request router over water/drink/print/molecular makers. Citation-gated, buildable from <$1500 of parts; reproducible physics research.
Interactive Streamlit app for detecting Parkinson’s Disease from voice recordings using a transparent stacked‑ensemble model, featuring per‑patient analysis, radar/bar charts, and feature‑importance insights.
Real-Time Evolutionary AI Ecosystem for Intelligent Genomics and Bioengineering
This project aims to model the disruptive effects of cytotoxic chemotherapeutic drugs on the immunoediting process.
This is a computational framework to analyze raw biological data generated from a polygraph test for the purpose of making psychophysiological inferences.
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