cell-analysis

Integrated Cell project implemented in pytorch

Shape-Out has been superseded by Shape-Out 2.

manipulation and analysis of phase microscopy data

A small tool in python to read the bright-field image data and the phase image data recovered from a Digital holographic microscope (DHM) and segment the nuclei to calculate physical parameters like roughness and volume.

High Intensity Peak Analysis for detecting High Intensity Cells

A Repo for Nusa's Project from REGE-VUB

Data-management/glue layer for a cell-painting feature-extraction pipeline

A script to plot traces of muscle contractions from video recordings. This is part of my ongoing PhD work.

PhenoPixel: A web-based bioimage analysis platform for bacterial single-cell microscopy analytics.

Deep Learning based segmentation and tracking to understand the dynamics and morphology of cells over time.

Automated high-content screening pipeline for phenotypic drug discovery

Lightweight pipeline for preprocessing, segmentation, tracking, and analysis of fluorescence microscopy images.