centromere
Here are 10 public repositories matching this topic...
An algorithm for centromere assembly using long error-prone reads
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May 25, 2021 - Python
Fast sequence alignment for centromere with RaMA
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Jan 13, 2026 - C++
Scripts for the Nature Biotechnology paper, 2020: Automated assembly of centromeres from ultra-long error-prone reads
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Aug 21, 2020 - Jupyter Notebook
Centromere calculation from TRASH-derived repeat arrays: block merging, filtering, and gap profiling.
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Dec 8, 2025 - R
Accurately find CDRs and boundaries using a Hidden Markov Model
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Jan 23, 2025 - Python
Automated centromere satellite identification and multi-omics visualization for chromosome-level genome assemblies
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Jul 24, 2026 - Python
Pipeline for telomere-to-telomere QC of genome assemblies: assembly stats, telomere detection, gap analysis, clustering, and visualization.
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Dec 8, 2025 - Shell
Parallel alpha-satellite HOR/SF annotation: single-binary Rust port of the HumAS-HMMER pipeline
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Aug 27, 2026 - Rust
Interactive browser for centromeric structural variation, on T2T-CHM13 v2.0. Encrypted pending publication.
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Sep 1, 2026 - HTML
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