t2t
Here are 12 public repositories matching this topic...
GENA-LM is a transformer masked language model trained on human DNA sequence.
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Aug 28, 2026 - Jupyter Notebook
zgtools: A pipeline that allows for the convenient acquisition of T2T (Telomere-to-Telomere) genomes.
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Aug 31, 2026
Fully automatic k-mer based polishing for genome assemblies. Based on original concept and design from Ivan Sovic, Ann McCartney, and Arang Rhie
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Mar 16, 2026 - Python
Centromere calculation from TRASH-derived repeat arrays: block merging, filtering, and gap profiling.
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Dec 8, 2025 - R
Snakemake workflow for the generate of BAM alignment statistics.
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Aug 27, 2026 - Python
Pipeline for telomere-to-telomere QC of genome assemblies: assembly stats, telomere detection, gap analysis, clustering, and visualization.
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Dec 8, 2025 - Shell
Mapping And Prediction of Shared Elements in Alignments
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Jun 16, 2025 - Python
T2T (UCSC hs1) mapping pipeline for human WGS (SRA) using SGE + Singularity. Originally built for schizophrenia neuron TE analysis.
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Dec 6, 2025 - Shell
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