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epitranscriptome

Here are 7 public repositories matching this topic...

y9c / m5C-UBSseq

🧪 Ultrafast bisulfite

bioinformatics rna epitranscriptomics epitranscriptome

Updated Apr 23, 2024
Python

pseudoU-BIDseq

y9c / pseudoU-BIDseq

🧪 Pipeline for detecting Ψ modification

rna modification mrna rrna epitranscriptomics epitranscriptome single-base pseudouridine

Updated May 8, 2024
Python

m6A-SACseq

y9c / m6A-SACseq

🧪 Optimized protocol for m6A-SAC-seq

docker pipeline ngs rna modification m6a epitranscriptomics epitranscriptome sac-seq single-base

Updated Jun 16, 2025
Python

cma2015 / deepEA

deepEA: a containerized web server for interactive analysis of epitranscriptome sequencing data

machine-learning galaxy ngs-analysis epitranscriptome

Updated Apr 5, 2021
HTML

CTLife / Sequencing_DNA_RNA_Protein

Perl, R, Python, and Bash Shell source codes for high-throughput sequencing (the 2nd, 3rd, and 4th generation sequencing for DNA, RNA, and Protein) data analysis by integrating lots of open-source tools or softwares.

bioinformatics pipelines dna protein rna high-throughput-sequencing epigenome epitranscriptome perl-r-python-shell dna-rna-protein-modifications 2nd-3rd-4th-generation

Updated Aug 5, 2023
Perl

NIGMS / RNA-Methylation-with-MeRIP-seq

The MeRIP-seq data analysis tutorial is structured into four submodules, designed to comprehensively guide users through the complete workflow for RNA methylation analysis

python aws bioinformatics nextflow differential-methylation high-throughput-sequencing cancer-research r-programming sagemaker functional-enrichment-analysis peak-calling epitranscriptome n6-methyladenosine merip-seq rna-methylation rna-stability

Updated Jun 6, 2025
HTML

dedonlab / AvaS_tRNA_mod

Scripts used in the manuscript "Pyridoxal phosphate-dependent biosynthesis of aminovaleramide by AvaS in tRNA"

mass-spectrometry trna epitranscriptome

Updated Mar 3, 2026
Python

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