Ultrafast identification of signature sequences in microbial genomes
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Sep 11, 2026 - Python
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pathogen-detection
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Sequence Matching fOr REpiratory Diseases, SMORE'D, is a command-line sequence classification tool tailored to meet the needs of the Undiagnosed Respiratory Disease Outbreak (URDO) branch at CDC. SMORE'D is a k-mer based classification tool capable of rapidly classifying read sequences generated by multi-pathogen detection platforms.
bioinformatics genomics ngs public-health microbial-genomics bacteria taxonomy-assignment ngs-analysis pathogen-detection
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Mar 24, 2020 - Python
Closed-form sequencing depth bounds for detecting divergent pathogens in clinical metagenomic sequencing (mNGS)
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Aug 15, 2026 - Python
ZoonomiX is a bioinformatics pipeline for analyzing microbial genomes, detecting pathogenicity, resistance genes, and mobile elements, and assessing zoonotic risk using BLASTn.
genetic-algorithms resistance-genes pathogen-detection resistance-calculator zoonosis zoonotic-markers
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Feb 23, 2025 - Python
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