qupath / qupath Star 1.4k Code Issues Pull requests QuPath - Open-source bioimage analysis for researchgroovyopencvmachine-learningimagejjavafximage-processinghistologycell-segmentationbioimage-informaticsdigital-pathologypathologywhole-slide-imagingcell-analysiscomputational-pathologybioimage-analysistissue-microarray-analysis Updated Aug 19, 2026Java
DeepMicroscopy / Cox_AMIL Star 6 Code Issues Pull requests Code for our BVM workshop submission "Attention-based Multiple Instance Learning for Survival Prediction on Lung Cancer Tissue Microarrays"deep-learninglung-cancercomputational-pathologytissue-microarray-analysismultiple-instance-learninghistopathology Updated Dec 16, 2022Jupyter Notebook
hanruijiang / TMA-ADA Star 3 Code Issues Pull requests Tissue Microarray Auto De-Arraymedical-imagingpathologytissue-microarray-analysis Updated Apr 28, 2022Python
stopsack / batchtma Star 1 Code Issues Pull requests batchtma: R package to adjust for batch effects, for example between tissue microarraysmeasurement-errorbatch-effectstissue-microarray-analysis Updated Feb 23, 2026R
larry080201 / RESTORE_norm Star 1 Code Issues Pull requests Perform RESTORE normalization on multiplexed imaging data.normalizationtissue-microarray-analysismultiplexed-imagingspatial-omics Updated Jun 22, 2023Python