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ARROW-750: [Format] [C++] Add LargeBinary and LargeString types - #4919
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pitrou wants to merge 151 commits into
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ARROW-750: [Format] [C++] Add LargeBinary and LargeString types#4919pitrou wants to merge 151 commits into
pitrou wants to merge 151 commits into
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Dependent crates may not want the rustyline dependency, specially since the nightly support seems to be custom. Introduce a "cli" feature to allow consumers to not bring in the cli depedencies. Author: Marius Seritan <github@winding-lines.com> Closesapache#4742 from winding-lines/master and squashes the following commits: 2331587 <Marius Seritan> Make the datafusion cli optional Dependent crates may not want the rustyline dependency, specially since the nightly support seems to be custom. Introduce a "cli" feature to allow consumers to not bring in the cli depedencies.
Because we don't publish modules to crates.io yet. Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4747 from kou/release-verify-rust and squashes the following commits: c424af6 <Sutou Kouhei> Use local modules to verify RC
…lease/03-binary.sh Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4753 from kou/release-upload-binary-avoid-known-host-duplication and squashes the following commits: 7fc0018 <Sutou Kouhei> Avoid duplicated known host SSH error in dev/release/03-binary.sh
Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4754 from kou/release-skip-uploaded-binary and squashes the following commits: e8cd528 <Sutou Kouhei> Skip already uploaded file
Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4755 from kou/release-add-missing-wait and squashes the following commits: 081c1aa <Sutou Kouhei> Add missing waits on uploading binaries
libplasma-glib-doc and libgandiva-glib-doc are unavailable unexpetedly. It should be fixed in the next release. Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4756 from kou/release-verify-apt-update-packages and squashes the following commits: d95f70d <Sutou Kouhei> Update expected package list
Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4758 from kou/release-verify-apt-update-distributions and squashes the following commits: 6a2af8d <Sutou Kouhei> Update supported distributions
C++ and Python Tests pass locally so this seems to be ok for us. Author: Uwe L. Korn <uwelk@xhochy.com> Closesapache#4752 from xhochy/ARROW-5609 and squashes the following commits: 6e087d6 <Uwe L. Korn> ARROW-5609: Set CMP0068 CMake policy to avoid macOS warnings
But really 32768 columns should be enough for anyone :) Author: Micah Kornfield <emkornfield@gmail.com> Closesapache#4762 from emkornfield/csv and squashes the following commits: ab0504c <Micah Kornfield> lower number of columns in test to satisfy ming 8f53a8a <Micah Kornfield> remove test acfe2d8 <Micah Kornfield> remove cap, make min rows_in_chunk 512 08ddc22 <Micah Kornfield> remove floor duplication 211472a <Micah Kornfield> powers of 2 are better b91a9e1 <Micah Kornfield> ARROW-5791: Fix infinite loop with more the 32768 columns. Cap max columns
External shell scripts may refer unbound variable: /tmp/arrow-0.14.0.yum2X/apache-arrow-0.14.0/test-miniconda/etc/profile.d/conda.sh: line 55: PS1: unbound variable Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4773 from kou/release-verify-without-u and squashes the following commits: e272703 <Sutou Kouhei> Remove undefined variable check from verify script
…didate.sh This is a temporary fix Author: Wes McKinney <wesm+git@apache.org> Closesapache#4768 from wesm/rc-no-curl-download-background and squashes the following commits: 171f92e <Wes McKinney> Do not curl in background
Author: Antoine Pitrou <antoine@python.org> Closesapache#4767 from pitrou/ARROW-5564-conda-uriparser and squashes the following commits: 3c422c9 <Antoine Pitrou> ARROW-5564: Use uriparser from conda-forge
- Add utility methods for unaligned loads use where errors are discovered. - Upgrade version of flatbuffers to avoid issues with unaligned load in that library - Discover bug in spec that makes zero-copy well defined behavior virtually impossible with flatbuffers (need to discuss on ML). For now I'm not turning on ASAN and will file a follow-up JIRA to track this. Still needed: - [ ] Performance testing - [X] Discuss flatbuffers issues (I sent e-mail to LM) Author: Micah Kornfield <emkornfield@gmail.com> Author: emkornfield <emkornfield@gmail.com> Closesapache#4757 from emkornfield/ubsan_mem and squashes the following commits: 5528584 <emkornfield> remove TODO db49fbb <Micah Kornfield> Ubsan excluding flatbuffers
…h too long Domain sockets have a platform-dependent path length limit. The release verification script on OSX tends to set a temporary directory that makes the test exceed this. Rather than hardcoding `/tmp` or some other directory, we skip the test instead. Author: David Li <li.davidm96@gmail.com> Closesapache#4793 from lihalite/arrow-5836 and squashes the following commits: 67eb3b7 <David Li> Skip Flight domain socket test when path too long
This patch bumps the version and makes sure that the release scripts bump it next time. After some reflection, the other idea of removing `pkgver` from the PKGBUILD probably wouldn't work, given the order of the build steps in makepkg. Author: Neal Richardson <neal.p.richardson@gmail.com> Closesapache#4805 from nealrichardson/r-pkgbuild-version and squashes the following commits: 1a84d25 <Neal Richardson> Bump version in ci/PKGBUILD in release
Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4795 from kou/cpp-macos-grpc-openssl and squashes the following commits: 6014d45 <Sutou Kouhei> Delegate OPENSSL_ROOT_DIR to bundled gRPC
This works Protobuf_SOURCE=AUTO well on environments that have old Protocol Buffers. Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4785 from kou/cpp-protobuf-version-check and squashes the following commits: b4e9a88 <Sutou Kouhei> Add required Protocol Buffers versions check
Author: Antoine Pitrou <antoine@python.org> Closesapache#4791 from pitrou/ARROW-5775-boxed-fields and squashes the following commits: 9c2a333 <Antoine Pitrou> Add "inline" 6fe0b86 <Antoine Pitrou> ARROW-5775: Fix thread-unsafe cached data
…gen.sh in dev/release/02-source.sh c_glib/ source archive is generated by `make dist` because includes configure script. The current `dev/release/02-source.sh` build Arrow C++ and Arrow GLib to include the artifacts of GTK-Doc and then run `make dist`. But it is slow. So this PR run only `c_glib/autogen.sh` and then replace c_glib/. Author: Yosuke Shiro <yosuke.shiro615@gmail.com> Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4749 from shiro615/release-replace-c-glib-after-running-autogen and squashes the following commits: 9a69f8e <Yosuke Shiro> Remove an unnecessary environment variable 3a2550f <Yosuke Shiro> Remove omit from 02-source-test.rb 501a2dd <Yosuke Shiro> Remove autom4te.cache after running autogen.sh 46a4f89 <Sutou Kouhei> Use docker-compose e357a88 <Yosuke Shiro> Exclude c_glib/autom4te.cache/* from RAT check 70cb4a7 <Yosuke Shiro> Remove an unnecessary diff aa78680 <Yosuke Shiro> Enable test test_glib_configure on Travis CI e04276e <Yosuke Shiro> Remove libraries for C++ build 56098ae <Yosuke Shiro> Replace c_glib/ by c_glib/ after running autogen.sh
Also fix a warning because of static variables in headers. Author: Antoine Pitrou <antoine@python.org> Closesapache#4808 from pitrou/ARROW-5851-compile-reference-benchmarks and squashes the following commits: fb6740a <Antoine Pitrou> ARROW-5851: Fix compilation of reference benchmarks
Author: Antoine Pitrou <antoine@python.org> Closesapache#4804 from pitrou/ARROW-5849-mingw-warnings and squashes the following commits: ff48a18 <Antoine Pitrou> ARROW-5849: Fix compiler warnings on mingw32
Author: Yosuke Shiro <yosuke.shiro615@gmail.com> Closesapache#4816 from shiro615/cpp-remove-duplicate-library and squashes the following commits: 1a200d4 <Yosuke Shiro> Remove duplicate library in cpp/Brewfile
Because gRPC requires c-ares CMake config. See also: https://lists.apache.org/thread.html/babb7985a8206807dd8893a2c7affdb733f3d561ecfcc7f26ba660d9@%3Cdev.arrow.apache.org%3E Author: Sutou Kouhei <kou@clear-code.com> Closesapache#4783 from kou/cpp-c-ares-require-cmake-config and squashes the following commits: 7fe2784 <Sutou Kouhei> Require c-ares CMake config
… OpenSSL The wheel build and test build succeeds, just the deployments fails because of removed openssl for testing: https://travis-ci.org/ursa-labs/crossbow/builds/555822505 The currently running build should pass: https://travis-ci.org/ursa-labs/crossbow/builds/555849713 although we have a bunch of warnings `<lib> was built for newer OSX version (10.12) than being linked (10.9)` for the dependencies coming from brew. cc @xhochy Author: Krisztián Szűcs <szucs.krisztian@gmail.com> Closesapache#4823 from kszucs/osx-wheel-openssl and squashes the following commits: eb45ae4 <Krisztián Szűcs> reinstall openssl ca8d177 <Krisztián Szűcs> ignore deps be4ab0f <Krisztián Szűcs> openssl
…n to avoid segfault As reported on JIRA, the following script provokes a segfault ``` #! /usr/bin/env python import pyarrow import sys del sys.modules['pyarrow.lib'] ``` For some reason this does not trigger the destruction of the private `_ExtensionTypesInitializer` object. Not sure why (Antoine may know). Using the atexit module instead seems to do the trick Author: Wes McKinney <wesm+git@apache.org> Closesapache#4824 from wesm/ARROW-5863 and squashes the following commits: ba60578 <Wes McKinney> Use atexit module for extension type finalization
…nylinux2010 image so lz4 is statically linked I pushed the image to Docker Hub (it was on quay.io before). I'm not sure what's the best way to test for this -- I checked the produced wheels locally to verify that liblz4.so is no longer required Author: Wes McKinney <wesm+git@apache.org> Closesapache#4828 from wesm/ARROW-5868 and squashes the following commits: 1fb1acb <Wes McKinney> Remove liblz4 shared libraries from /usr/local so static linking occurs
https://issues.apache.org/jira/browse/ARROW-5873 When cython ExtensionTypes are used as function arguments (can get a value passed by the user), they are allowed to be None, so when accessing attributes from them, need to explicitly check that they are not None (https://cython.readthedocs.io/en/latest/src/userguide/extension_types.html#extension-types-and-none) Author: Joris Van den Bossche <jorisvandenbossche@gmail.com> Closesapache#4839 from jorisvandenbossche/ARROW-5873-schema-equals-segfault and squashes the following commits: c4dbee5 <Joris Van den Bossche> ARROW-5873: guard for passed None in Schema.equals
…n pa.array https://issues.apache.org/jira/browse/ARROW-5790 In the `NumPyConverter` constructor, we access the strides of the array with `PyArray_STRIDES(arr_)[0]`, so need to ensure that the array is 1D before passing it there. Author: Joris Van den Bossche <jorisvandenbossche@gmail.com> Closesapache#4837 from jorisvandenbossche/ARROW-5790 and squashes the following commits: cc66365 <Joris Van den Bossche> ARROW-5790: raise error when trying to convert 0-dim array in pa.array
- Java servers before didn't actually wait for the Handshake RPC to complete - Java servers didn't interrupt auth handlers if the client sent an error - Python/C++ clients didn't explicitly finish their end of the connection Together, this led to the 'hanging forever' issue @rymurr saw. I've left some TODOs as I would like to raise Flight-specific exceptions (which I'm working on in parallel). Travis: https://travis-ci.com/lihalite/arrow/builds/118503572 AppVeyor: https://ci.appveyor.com/project/lihalite/arrow/builds/25858510 Author: David Li <li.davidm96@gmail.com> Closesapache#4838 from lihalite/arrow-5877 and squashes the following commits: fc35d19 <David Li> Wait for authentication to complete server-side
Write FieldNodes in correct order in ArrowStreamWriter. Also, fix a small issue with writing BooleanArrays' NullBitmapBuffer. @pgovind@chutchinson Author: Eric Erhardt <eric.erhardt@microsoft.com> Closesapache#4836 from eerhardt/Fix5887 and squashes the following commits: f0835de <Eric Erhardt> Write FieldNodes in correct order in ArrowStreamWriter.
Remove some unused functions Closesapache#4899 from pitrou/ARROW-3032-numpy-headers and squashes the following commits: e094f3b <Antoine Pitrou> ARROW-3032: Clean up Numpy-related headers Authored-by: Antoine Pitrou <antoine@python.org> Signed-off-by: Wes McKinney <wesm+git@apache.org>
…sicDecimal128::FromDouble - std::round can round down also. - also, there is a check further down for overflow (2^127-1). Author: Pindikura Ravindra <ravindra@dremio.com> Closesapache#4894 from pravindra/arrow-5964 and squashes the following commits: 8d6f37a <Pindikura Ravindra> fix tests eaee1ab <Pindikura Ravindra> ARROW-5964: remove overflow check after rounding
… restrict libstdc++ symbols. I tried more aggressive restrictions that exports only *gandiva::* but unit tests crashed. (see the previous commit in this PR). Author: Zhuo Peng <1835738+brills@users.noreply.github.com> Closesapache#4883 from brills/linker-script and squashes the following commits: 67e1347 <Zhuo Peng> cmake format 778a194 <Zhuo Peng> Only restrict symbols from libstdc++ a8e0bac <Zhuo Peng> Added a linker script for Gandiva to limit exported symbols
This changes the PKGBUILD script to use the local checkout to build the C++ library. Author: Neal Richardson <neal.p.richardson@gmail.com> Closesapache#4900 from nealrichardson/r-appveyor-local and squashes the following commits: a87a8cf <Neal Richardson> Revert "Test only mine" 16b7e56 <Neal Richardson> More playing with working directory ed14a37 <Neal Richardson> Expand path f0bf364 <Neal Richardson> Try this eef10c6 <Neal Richardson> Oops ec8aebf <Neal Richardson> Try without checksum 4fa5f70 <Neal Richardson> Test only mine 214a4fe <Neal Richardson> Try building C++ lib from local git checkout
Related to [ARROW-5968](https://issues.apache.org/jira/browse/ARROW-5968). Some Preconditions check are duplicate in JdbcToArrow#sqlToArrow Author: tianchen <niki.lj@alibaba-inc.com> Closesapache#4896 from tianchen92/jdbc_adapter and squashes the following commits: 0b507ea <tianchen> remove duplicated check
Author: Micah Kornfield <emkornfield@gmail.com> Closesapache#4903 from emkornfield/namespace_macro and squashes the following commits: 5d06dba <Micah Kornfield> ARROW-5976: RETURN_IF_ERROR(ctx) should be namespaced
Author: Prudhvi Porandla <prudhvi.porandla@icloud.com> Closesapache#4887 from pprudhvi/div-impl and squashes the following commits: aa02da5 <Prudhvi Porandla> add test for float32; specify namespace of trunc 7ac9090 <Prudhvi Porandla> explicit cast after trunc d6a3d60 <Prudhvi Porandla> lint 014658d <Prudhvi Porandla> div for float, double types 7fcaca8 <Prudhvi Porandla> div for integer types
…lder in writer.cc - Other small cleanups/comments based on my grokking of the code. - Vectorize inner loop of List based LevelBuilder where possible Closesapache#4827 from emkornfield/parquet_cleanup and squashes the following commits: 2f77313 <Wes McKinney> Export operator<< symbols for DataType, TimeUnit on Windows e1698e5 <Micah Kornfield> fix compilation issues 152a6ee <Micah Kornfield> change back to signed it seems to be what the API uses 67ccf3e <Micah Kornfield> update references ef7fade <Micah Kornfield> remove unneeded nesting 6776e61 <emkornfield> Update cpp/src/parquet/arrow/writer.cc 7cbc8e4 <emkornfield> Update cpp/src/parquet/arrow/writer.cc 83ee5ae <emkornfield> Update cpp/src/parquet/arrow/writer.cc 325af52 <Micah Kornfield> undo reserve 4516110 <Micah Kornfield> Small style issues 7795352 <Micah Kornfield> change from array builder to buffer builde Lead-authored-by: Micah Kornfield <emkornfield@gmail.com> Co-authored-by: emkornfield <emkornfield@gmail.com> Co-authored-by: Wes McKinney <wesm+git@apache.org> Signed-off-by: Wes McKinney <wesm+git@apache.org>
… authors See https://help.github.com/en/articles/creating-a-commit-with-multiple-authors. So when multiple people contribute to a PR it will show up in their contribution count. In the past we have only attributed the person with the most commits, or in the event of a tie, the most recent committer in a PR. We're having more PRs with multiple people involved so I think it's nice to acknowledge everyone. I also added the Signed-off-by: mark which includes the Apache committer information in the commit message This was implemented in Apache Spark in https://github.com/apache/spark/blob/master/dev/merge_spark_pr.py so I've adopted the approach here. Closesapache#4882 from wesm/ARROW-5716 and squashes the following commits: 816a137 <Wes McKinney> Do not prompt for lead author if there is only one person involved 74fb732 <Wes McKinney> Put authors at end of commit message so GitHub understands them 6d65ceb <Wes McKinney> Fix DEBUG env variable flag logic 0ebc17e <Wes McKinney> Add debugging output 7924dab <Wes McKinney> Add support for lead/co-authors to merge script Authored-by: Wes McKinney <wesm+git@apache.org> Signed-off-by: Wes McKinney <wesm+git@apache.org>
…itive types Related to [ARROW-5861](https://issues.apache.org/jira/browse/ARROW-5861). Initial implement to support convert Avro record with primitive types to Arrow objects. Author: tianchen <niki.lj@alibaba-inc.com> Closesapache#4812 from tianchen92/ARROW-5861 and squashes the following commits: 2439478 <tianchen> use UnsupportedOperationException fa3f39a <tianchen> resolve comments 7c3a730 <tianchen> add consumers and use GenericDatumReader 61d2dac <tianchen> fix style 54479c8 <tianchen> Initial implement to convert Avro record with primitive types
… dictionary encoding As discussed in apache#4792 Implement a hash table to only store hash & index, meanwhile add check equal function in ValueVector API. Author: tianchen <niki.lj@alibaba-inc.com> Closesapache#4846 from tianchen92/hasher and squashes the following commits: 2db7302 <tianchen> fix 5facc2a <tianchen> resolve comments 175192a <tianchen> fix test and style 7a87526 <tianchen> implementation of equals and hashCode c89608b <tianchen> fix 8f2e1a2 <tianchen> hash table prototype
… duplication A bunch of business logic had gotten copy-pasted to create parquet/arrow/record_writer.*. This bases ColumnReader/RecordReader off a common private base class and removes other code duplication. I'm going to base explorations in ARROW-3772 on this Closesapache#4906 from wesm/PARQUET-1468 and squashes the following commits: 5eb664f <Wes McKinney> Finish cleaning, compiles and tests pass 3df7c93 <Wes McKinney> Consolidate internal::RecordReader, ColumnReader files Authored-by: Wes McKinney <wesm+git@apache.org> Signed-off-by: Wes McKinney <wesm+git@apache.org>
Author: Marco Neumann <marco@crepererum.net> Closesapache#4911 from crepererum/ARROW-5990 and squashes the following commits: b05e734 <Marco Neumann> add bounds check to RowGroupMetaData.column
Related to [ARROW-5986](https://issues.apache.org/jira/browse/ARROW-5986). In last few weeks, we did some refactor in dictionary encoding. Since the new designed hash table for DictionaryEncoder and hashCode & equals API in ValueVector already checked in, some classed are no use anymore like DictionaryEncodingHashTable, BaseBinaryVector and related benchmarks & UT. Fortunately, these changes are not made into version 0.14, which makes possible to remove them. I think this should be merged before 0.14.1? @emkornfield Author: tianchen <niki.lj@alibaba-inc.com> Closesapache#4909 from tianchen92/ARROW-5986 and squashes the following commits: bd6d7af <tianchen> ARROW-5986: Code cleanup for dictionary encoding
…null when the underlying data is null For variable-width vectors (VarCharVector and VarBinaryVector), when the validity bit is not set, it means the underlying data is null, so the get method should return null. However, the current implementation throws an IllegalStateException when NULL_CHECKING_ENABLED is set, or returns an empty array when the flag is clear. Maybe the purpose of this design is to be consistent with fixed-width vectors. However, the scenario is different: fixed-width vectors (e.g. IntVector) throw an IllegalStateException, simply because the primitive types are non-nullable. Author: liyafan82 <fan_li_ya@foxmail.com> Closesapache#4901 from liyafan82/fly_0717_varget and squashes the following commits: 8fe83f7 <liyafan82> Variable width vectors' get methods should return null when the underlying data is null
All types of variable-width vectors can reuse the same comparator for sorting & searching. Author: liyafan82 <fan_li_ya@foxmail.com> Closesapache#4860 from liyafan82/fly_0712_varsort and squashes the following commits: cbd8c3f <liyafan82> Provide a utility to create the default comparator 46d2c11 <liyafan82> Support sort & compare for all variable width vectors
Related to [ARROW-5918](https://issues.apache.org/jira/browse/ARROW-5918). Author: tianchen <niki.lj@alibaba-inc.com> Closesapache#4859 from tianchen92/ARROW-5918 and squashes the following commits: 3732a78 <tianchen> update javadoc and add unsafe method in BaseIntVector 1562ae1 <tianchen> fix 2 7ddce12 <tianchen> fix 26d30be <tianchen> fix e65473c <tianchen> fix comments fe9c2ec <tianchen> fix 9b8afa6 <tianchen> enable null checking 9f2fc09 <tianchen> fix 5739cc4 <tianchen> ARROW-5918: Add get to BaseIntVector interface
Closesapache#4907 from efiop/patch-1 and squashes the following commits: e4a2743 <Ruslan Kuprieiev> ARROW-5989: accommodate openjdk-8 path search prefix Authored-by: Ruslan Kuprieiev <kupruser@gmail.com> Signed-off-by: Sutou Kouhei <kou@clear-code.com>
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@pitrou it builds locally, the first three commits should not be there though |
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Closing in favour of #4921 |
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These are like Binary and String respectively, except with 64-bit offsets so as to allow extremely large individual values.
Subprojects (Gandiva, Parquet) as well as other bindings and implementations (e.g. Python) will have to be updated separately.