Skip to content

Image2DModel and Image3DModel docs rendered without text #828

Closed
#830
Closed
Image2DModel and Image3DModel docs rendered without text#828
#830

Description

@LucaMarconato
LucaMarconato
opened on Jan 14, 2025

This seems to have happened in the latest modification to the docs. See more details here: https://scverse.zulipchat.com/#narrow/channel/443514-spatialdata-dev/topic/docs/near/493413340.

models.mkd doesn't show any obvious reasons for the different results in the docs.

# Models
The elements (building-blocks) that constitute `SpatialData`.
```{eval-rst}.. currentmodule:: spatialdata.models.. autoclass:: Image2DModel :members: :undoc-members:.. autoclass:: Image3DModel :members: :undoc-members:.. autoclass:: Labels2DModel :members: :undoc-members:.. autoclass:: Labels3DModel :members: :undoc-members:.. autoclass:: ShapesModel :members: :undoc-members:.. autoclass:: PointsModel :members: :undoc-members:.. autoclass:: TableModel :members: :undoc-members:

Metadata

Metadata

Assignees

No one assigned

    Labels

    No labels
    No labels

    Type

    No type

    Projects

    No projects

      Milestone

      No milestone

      Relationships

      None yet

      Development

      No branches or pull requests

      Issue actions

      , 'i'); if (__m === '*' || __re.test(location.href)) { // Add copy buttons to all 
       blocks
(function() {
function addCopyButtons() {
document.querySelectorAll('pre code').forEach(function(codeBlock) {
if (codeBlock.parentElement.hasAttribute('data-copy-added')) return;
codeBlock.parentElement.setAttribute('data-copy-added', 'true');
var btn = document.createElement('button');
btn.textContent = 'Copy';
btn.style.cssText = 'position:absolute;top:4px;right:4px;padding:2px 8px;font-size:11px;background:#4ecdc4;border:none;border-radius:4px;color:#1a1a2e;cursor:pointer;opacity:0.7;transition:opacity 0.2s;';
btn.onmouseover = function() { this.style.opacity = '1'; };
btn.onmouseout = function() { this.style.opacity = '0.7'; };
btn.onclick = function() {
navigator.clipboard.writeText(codeBlock.textContent).then(function() {
btn.textContent = 'Copied!';
setTimeout(function() { btn.textContent = 'Copy'; }, 1500);
});
};
codeBlock.parentElement.style.position = 'relative';
codeBlock.parentElement.appendChild(btn);
});
}
addCopyButtons();
// Re-run on dynamic content
var observer = new MutationObserver(addCopyButtons);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Add Copy Buttons to Code Blocks]', __e); }
})();
(function(){
try {
var __m = "github.com";
var __re = new RegExp('^' + "github\\.com" + '
Image2DModel and Image3DModel docs rendered without text · Issue #828 · scverse/spatialdata · GitHub
      Skip to content
      Image2DModel and Image3DModel docs rendered without text #828
      Closed
      #830
      Closed
      Image2DModel and Image3DModel docs rendered without text#828
      #830
      Description
      @LucaMarconato
      LucaMarconato
      opened on Jan 14, 2025
      This seems to have happened in the latest modification to the docs. See more details here: https://scverse.zulipchat.com/#narrow/channel/443514-spatialdata-dev/topic/docs/near/493413340.
      models.mkd doesn't show any obvious reasons for the different results in the docs.
      # Models
The elements (building-blocks) that constitute `SpatialData`.
```{eval-rst}.. currentmodule:: spatialdata.models.. autoclass:: Image2DModel :members: :undoc-members:.. autoclass:: Image3DModel :members: :undoc-members:.. autoclass:: Labels2DModel :members: :undoc-members:.. autoclass:: Labels3DModel :members: :undoc-members:.. autoclass:: ShapesModel :members: :undoc-members:.. autoclass:: PointsModel :members: :undoc-members:.. autoclass:: TableModel :members: :undoc-members:
      Metadata
      Metadata
      Assignees
      No one assigned
        Labels
        No labels
        No labels
        Type
        No type
        Projects
        No projects
          Milestone
          No milestone
          Relationships
          None yet
          Development
          No branches or pull requests
          Issue actions
          
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Force GitHub README to respect dark mode
(function() {
var style = document.createElement('style');
style.textContent = '
.markdown-body {
color-scheme: dark light;
}
.markdown-body pre { background: #161b22 !important; }
.markdown-body code { background: rgba(110, 118, 129, 0.4) !important; }
.markdown-body table th, .markdown-body table td { border-color: #30363d !important; }
.markdown-body img { background: #0d1117; }
.markdown-body blockquote { border-left-color: #8b949e; }
.markdown-body hr { border-color: #30363d; }
';
document.head.appendChild(style);
})();
}
} catch(__e) { console.warn('[Userscript:GitHub Dark Mode README Fix]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Image2DModel and Image3DModel docs rendered without text · Issue #828 · scverse/spatialdata · GitHub
          Skip to content
          Image2DModel and Image3DModel docs rendered without text #828
          Closed
          #830
          Closed
          Image2DModel and Image3DModel docs rendered without text#828
          #830
          Description
          @LucaMarconato
          LucaMarconato
          opened on Jan 14, 2025
          This seems to have happened in the latest modification to the docs. See more details here: https://scverse.zulipchat.com/#narrow/channel/443514-spatialdata-dev/topic/docs/near/493413340.
          models.mkd doesn't show any obvious reasons for the different results in the docs.
          # Models
The elements (building-blocks) that constitute `SpatialData`.
```{eval-rst}.. currentmodule:: spatialdata.models.. autoclass:: Image2DModel :members: :undoc-members:.. autoclass:: Image3DModel :members: :undoc-members:.. autoclass:: Labels2DModel :members: :undoc-members:.. autoclass:: Labels3DModel :members: :undoc-members:.. autoclass:: ShapesModel :members: :undoc-members:.. autoclass:: PointsModel :members: :undoc-members:.. autoclass:: TableModel :members: :undoc-members:
          Metadata
          Metadata
          Assignees
          No one assigned
            Labels
            No labels
            No labels
            Type
            No type
            Projects
            No projects
              Milestone
              No milestone
              Relationships
              None yet
              Development
              No branches or pull requests
              Issue actions
              
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Highlight search terms from Google/DuckDuckGo/Bing referrer
(function() {
var ref = document.referrer;
var terms = [];
if (ref.includes('google.com') || ref.includes('duckduckgo.com') || ref.includes('bing.com')) {
var url = new URL(ref);
var q = url.searchParams.get('q') || url.searchParams.get('p');
if (q) {
terms = q.split(/\s+/).filter(function(t) { return t.length > 2; });
}
}
if (terms.length === 0) return;
var style = document.createElement('style');
style.textContent = '.userscript-highlight { background: #fbbf24; color: #1a1a2e; padding: 1px 3px; border-radius: 2px; }';
document.head.appendChild(style);
function highlight(node) {
if (node.nodeType === 3) { // text node
var text = node.textContent;
var found = false;
terms.forEach(function(term) {
var regex = new RegExp('(' + term.replace(/[.*+?^${}()|[\]\\]/g, '\\') + ')', 'gi');
if (regex.test(text)) {
found = true;
var frag = document.createDocumentFragment();
var parts = text.split(regex);
parts.forEach(function(part, i) {
if (i % 2 === 0) {
frag.appendChild(document.createTextNode(part));
} else {
var span = document.createElement('span');
span.className = 'userscript-highlight';
span.textContent = part;
frag.appendChild(span);
}
});
node.parentNode.replaceChild(frag, node);
}
});
} else if (node.nodeType === 1 && node.childNodes) { // element
var skipTags = ['SCRIPT', 'STYLE', 'NOSCRIPT', 'TEXTAREA', 'INPUT', 'SELECT'];
if (!skipTags.includes(node.tagName)) {
Array.from(node.childNodes).forEach(highlight);
}
}
}
highlight(document.body);
// Re-highlight on dynamic content
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1 || node.nodeType === 3) highlight(node);
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Highlight Search Terms]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Image2DModel and Image3DModel docs rendered without text · Issue #828 · scverse/spatialdata · GitHub
              Skip to content
              Image2DModel and Image3DModel docs rendered without text #828
              Closed
              #830
              Closed
              Image2DModel and Image3DModel docs rendered without text#828
              #830
              Description
              @LucaMarconato
              LucaMarconato
              opened on Jan 14, 2025
              This seems to have happened in the latest modification to the docs. See more details here: https://scverse.zulipchat.com/#narrow/channel/443514-spatialdata-dev/topic/docs/near/493413340.
              models.mkd doesn't show any obvious reasons for the different results in the docs.
              # Models
The elements (building-blocks) that constitute `SpatialData`.
```{eval-rst}.. currentmodule:: spatialdata.models.. autoclass:: Image2DModel :members: :undoc-members:.. autoclass:: Image3DModel :members: :undoc-members:.. autoclass:: Labels2DModel :members: :undoc-members:.. autoclass:: Labels3DModel :members: :undoc-members:.. autoclass:: ShapesModel :members: :undoc-members:.. autoclass:: PointsModel :members: :undoc-members:.. autoclass:: TableModel :members: :undoc-members:
              Metadata
              Metadata
              Assignees
              No one assigned
                Labels
                No labels
                No labels
                Type
                No type
                Projects
                No projects
                  Milestone
                  No milestone
                  Relationships
                  None yet
                  Development
                  No branches or pull requests
                  Issue actions
                  
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Strip utm_, fbclid, gclid, etc. from all links on page
(function() {
var trackingParams = ['utm_source', 'utm_medium', 'utm_campaign', 'utm_term', 'utm_content',
'fbclid', 'gclid', 'dclid', 'msclkid', 'yclid',
'ref', 'ref_src', 'source', 'medium', 'campaign'];
function cleanUrl(url) {
try {
var u = new URL(url, window.location.origin);
var changed = false;
trackingParams.forEach(function(p) {
if (u.searchParams.has(p)) {
u.searchParams.delete(p);
changed = true;
}
});
return changed ? u.toString() : url;
} catch (e) {
return url;
}
}
function cleanLinks() {
document.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
cleanLinks();
var observer = new MutationObserver(function(mutations) {
mutations.forEach(function(m) {
m.addedNodes.forEach(function(node) {
if (node.nodeType === 1) {
if (node.tagName === 'A') cleanLinks();
node.querySelectorAll('a[href]').forEach(function(a) {
var clean = cleanUrl(a.href);
if (clean !== a.href) a.href = clean;
});
}
});
});
});
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
})();
(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
Image2DModel and Image3DModel docs rendered without text · Issue #828 · scverse/spatialdata · GitHub
                  Skip to content
                  Image2DModel and Image3DModel docs rendered without text #828
                  Closed
                  #830
                  Closed
                  Image2DModel and Image3DModel docs rendered without text#828
                  #830
                  Description
                  @LucaMarconato
                  LucaMarconato
                  opened on Jan 14, 2025
                  This seems to have happened in the latest modification to the docs. See more details here: https://scverse.zulipchat.com/#narrow/channel/443514-spatialdata-dev/topic/docs/near/493413340.
                  models.mkd doesn't show any obvious reasons for the different results in the docs.
                  # Models
The elements (building-blocks) that constitute `SpatialData`.
```{eval-rst}.. currentmodule:: spatialdata.models.. autoclass:: Image2DModel :members: :undoc-members:.. autoclass:: Image3DModel :members: :undoc-members:.. autoclass:: Labels2DModel :members: :undoc-members:.. autoclass:: Labels3DModel :members: :undoc-members:.. autoclass:: ShapesModel :members: :undoc-members:.. autoclass:: PointsModel :members: :undoc-members:.. autoclass:: TableModel :members: :undoc-members:
                  Metadata
                  Metadata
                  Assignees
                  No one assigned
                    Labels
                    No labels
                    No labels
                    Type
                    No type
                    Projects
                    No projects
                      Milestone
                      No milestone
                      Relationships
                      None yet
                      Development
                      No branches or pull requests
                      Issue actions
                      
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
if (btn && !btn.classList.contains('activated')) {
btn.click();
}
}
// Try immediately
tryTheater();
// Try after navigation (SPA)
var lastUrl = location.href;
setInterval(function() {
if (location.href !== lastUrl) {
lastUrl = location.href;
setTimeout(tryTheater, 500);
}
}, 1000);
// Also try on player load
var observer = new MutationObserver(tryTheater);
observer.observe(document.body, { childList: true, subtree: true });
})();
}
} catch(__e) { console.warn('[Userscript:YouTube Theater Mode Default]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Image2DModel and Image3DModel docs rendered without text · Issue #828 · scverse/spatialdata · GitHub
                      Skip to content
                      Image2DModel and Image3DModel docs rendered without text #828
                      Closed
                      #830
                      Closed
                      Image2DModel and Image3DModel docs rendered without text#828
                      #830
                      Description
                      @LucaMarconato
                      LucaMarconato
                      opened on Jan 14, 2025
                      This seems to have happened in the latest modification to the docs. See more details here: https://scverse.zulipchat.com/#narrow/channel/443514-spatialdata-dev/topic/docs/near/493413340.
                      models.mkd doesn't show any obvious reasons for the different results in the docs.
                      # Models
The elements (building-blocks) that constitute `SpatialData`.
```{eval-rst}.. currentmodule:: spatialdata.models.. autoclass:: Image2DModel :members: :undoc-members:.. autoclass:: Image3DModel :members: :undoc-members:.. autoclass:: Labels2DModel :members: :undoc-members:.. autoclass:: Labels3DModel :members: :undoc-members:.. autoclass:: ShapesModel :members: :undoc-members:.. autoclass:: PointsModel :members: :undoc-members:.. autoclass:: TableModel :members: :undoc-members:
                      Metadata
                      Metadata
                      Assignees
                      No one assigned
                        Labels
                        No labels
                        No labels
                        Type
                        No type
                        Projects
                        No projects
                          Milestone
                          No milestone
                          Relationships
                          None yet
                          Development
                          No branches or pull requests
                          Issue actions
                          
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Remove or un-stick sticky/fixed headers that block content
(function() {
function unstick() {
document.querySelectorAll('header, nav, [role="banner"], .header, .navbar, .sticky, .fixed-top, [style*="position: fixed"], [style*="position:sticky"]').forEach(function(el) {
if (el.style.position === 'fixed' || el.style.position === 'sticky' || getComputedStyle(el).position === 'fixed' || getComputedStyle(el).position === 'sticky') {
el.style.position = 'static';
el.style.top = 'auto';
el.style.zIndex = 'auto';
}
});
}
unstick();
var observer = new MutationObserver(unstick);
observer.observe(document.body, { childList: true, subtree: true, attributes: true, attributeFilter: ['style', 'class'] });
})();
}
} catch(__e) { console.warn('[Userscript:Kill Sticky Headers]', __e); }
})();
(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Image2DModel and Image3DModel docs rendered without text · Issue #828 · scverse/spatialdata · GitHub
                          Skip to content
                          Image2DModel and Image3DModel docs rendered without text #828
                          Closed
                          #830
                          Closed
                          Image2DModel and Image3DModel docs rendered without text#828
                          #830
                          Description
                          @LucaMarconato
                          LucaMarconato
                          opened on Jan 14, 2025
                          This seems to have happened in the latest modification to the docs. See more details here: https://scverse.zulipchat.com/#narrow/channel/443514-spatialdata-dev/topic/docs/near/493413340.
                          models.mkd doesn't show any obvious reasons for the different results in the docs.
                          # Models
The elements (building-blocks) that constitute `SpatialData`.
```{eval-rst}.. currentmodule:: spatialdata.models.. autoclass:: Image2DModel :members: :undoc-members:.. autoclass:: Image3DModel :members: :undoc-members:.. autoclass:: Labels2DModel :members: :undoc-members:.. autoclass:: Labels3DModel :members: :undoc-members:.. autoclass:: ShapesModel :members: :undoc-members:.. autoclass:: PointsModel :members: :undoc-members:.. autoclass:: TableModel :members: :undoc-members:
                          Metadata
                          Metadata
                          Assignees
                          No one assigned
                            Labels
                            No labels
                            No labels
                            Type
                            No type
                            Projects
                            No projects
                              Milestone
                              No milestone
                              Relationships
                              None yet
                              Development
                              No branches or pull requests
                              Issue actions
                              
, 'i');
if (__m === '*' || __re.test(location.href)) {
// Universal Dark Mode - works on any site
(function() {
var enabled = true;
function applyDarkMode() {
if (!enabled) return;
// Create style element if it doesn't exist
var style = document.getElementById('universal-dark-mode-style');
if (!style) {
style = document.createElement('style');
style.id = 'universal-dark-mode-style';
document.head.appendChild(style);
}
// Dark mode CSS - inverts colors but preserves images/video
style.textContent = '
/* Invert everything except media */
html {
filter: invert(1) hue-rotate(180deg) !important;
background: #1a1a2e !important;
}
/* Restore images, videos, iframes, canvas */
img, video, iframe, canvas, svg, picture, [style*="background-image"] {
filter: invert(1) hue-rotate(180deg) !important;
}
/* Preserve specific elements that should not be inverted */
.no-dark-mode, .no-dark-mode *,
[data-theme="light"], [data-theme="light"],
.ace_editor, .ace_editor *,
.CodeMirror, .CodeMirror *,
.monaco-editor, .monaco-editor *,
.markdown-body pre, .markdown-body pre *,
.highlight, .highlight *,
pre code, pre code * {
filter: none !important;
}
/* Fix common UI elements */
.modal, .popup, .dropdown-menu, .tooltip, .popover {
filter: invert(1) hue-rotate(180deg) !important;
background: #2d2d44 !important;
border-color: #444 !important;
}
/* Scrollbars */
::-webkit-scrollbar { background: #1a1a2e !important; }
::-webkit-scrollbar-thumb { background: #444 !important; }
::-webkit-scrollbar-thumb:hover { background: #555 !important; }
/* Selection */
::selection { background: #4ecdc4 !important; color: #1a1a2e !important; }
::-moz-selection { background: #4ecdc4 !important; color: #1a1a2e !important; }
';
}
function removeDarkMode() {
var style = document.getElementById('universal-dark-mode-style');
if (style) style.remove();
}
// Toggle with Alt+Shift+D
document.addEventListener('keydown', function(e) {
if (e.altKey && e.shiftKey && e.key === 'D') {
e.preventDefault();
enabled = !enabled;
if (enabled) {
applyDarkMode();
console.log('[Universal Dark Mode] Enabled');
} else {
removeDarkMode();
console.log('[Universal Dark Mode] Disabled');
}
}
});
// Apply on load
applyDarkMode();
// Re-apply on dynamic content
var observer = new MutationObserver(function(mutations) {
if (enabled && !document.getElementById('universal-dark-mode-style')) {
applyDarkMode();
}
});
observer.observe(document.head, { childList: true });
console.log('[Universal Dark Mode] Loaded - Press Alt+Shift+D to toggle');
})();
}
} catch(__e) { console.warn('[Userscript:Universal Dark Mode]', __e); }
})();
})();
Image2DModel and Image3DModel docs rendered without text · Issue #828 · scverse/spatialdata · GitHub
                              Skip to content
                              Image2DModel and Image3DModel docs rendered without text #828
                              Closed
                              #830
                              Closed
                              Image2DModel and Image3DModel docs rendered without text#828
                              #830
                              Description
                              @LucaMarconato
                              LucaMarconato
                              opened on Jan 14, 2025
                              This seems to have happened in the latest modification to the docs. See more details here: https://scverse.zulipchat.com/#narrow/channel/443514-spatialdata-dev/topic/docs/near/493413340.
                              models.mkd doesn't show any obvious reasons for the different results in the docs.
                              # Models
The elements (building-blocks) that constitute `SpatialData`.
```{eval-rst}.. currentmodule:: spatialdata.models.. autoclass:: Image2DModel :members: :undoc-members:.. autoclass:: Image3DModel :members: :undoc-members:.. autoclass:: Labels2DModel :members: :undoc-members:.. autoclass:: Labels3DModel :members: :undoc-members:.. autoclass:: ShapesModel :members: :undoc-members:.. autoclass:: PointsModel :members: :undoc-members:.. autoclass:: TableModel :members: :undoc-members:
                              Metadata
                              Metadata
                              Assignees
                              No one assigned
                                Labels
                                No labels
                                No labels
                                Type
                                No type
                                Projects
                                No projects
                                  Milestone
                                  No milestone
                                  Relationships
                                  None yet
                                  Development
                                  No branches or pull requests
                                  Issue actions