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Fix docs + minor edits - #643

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Closes#642
Also fixes the docs building, that stopped working last week.

minor

@LucaMarconatoLucaMarconato changed the title fix torch dependency in docs; minor commentFix docs + minor editsJul 24, 2024
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Codecov Report

All modified and coverable lines are covered by tests ✅

Project coverage is 89.94%. Comparing base (744093d) to head (148164d).
Report is 39 commits behind head on main.

Additional details and impacted files
@@ Coverage Diff @@## main #643 +/- ##
=======================================
Coverage 89.94% 89.94% =======================================
Files 44 44 Lines 6755 6755 =======================================
Hits 6076 6076 Misses 679 679
Files with missing linesCoverage Δ
src/spatialdata/_io/format.py84.35% <ø> (ø)

@LucaMarconato

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The bug with the docs is discussed here: sphinx-doc/sphinx#12589. There seems to be no fix as of 7.4.7; I am going to try using the suppress_warning workaround shown in the issue.

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LucaMarconato marked this pull request as ready for review July 24, 2024 16:08
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LucaMarconato merged commit 73fb2e0 into mainJul 24, 2024
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Fix docs + minor edits by LucaMarconato · Pull Request #643 · scverse/spatialdata · GitHub
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Fix docs + minor edits - #643
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Closes#642

Also fixes the docs building, that stopped working last week.
minor
@LucaMarconatoLucaMarconato
changed the title
fix torch dependency in docs; minor commentFix docs + minor editsJul 24, 2024
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Codecov Report
All modified and coverable lines are covered by tests ✅
Project coverage is 89.94%. Comparing base (744093d) to head (148164d).

Report is 39 commits behind head on main.
Additional details and impacted files
@@ Coverage Diff @@## main #643 +/- ##
=======================================
Coverage 89.94% 89.94% =======================================
Files 44 44 Lines 6755 6755 =======================================
Hits 6076 6076 Misses 679 679 
Files with missing linesCoverage Δ
src/spatialdata/_io/format.py84.35% <ø> (ø)
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The bug with the docs is discussed here: sphinx-doc/sphinx#12589. There seems to be no fix as of 7.4.7; I am going to try using the suppress_warning workaround shown in the issue.
@LucaMarconato
LucaMarconato
marked this pull request as ready for review
July 24, 2024 16:08
@LucaMarconato
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merged commit 73fb2e0
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mainJul 24, 2024
@LucaMarconato
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fix/docs

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July 24, 2024 16:08
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, 'i');
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try {
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Fix docs + minor edits by LucaMarconato · Pull Request #643 · scverse/spatialdata · GitHub
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Fix docs + minor edits - #643
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Closes#642

Also fixes the docs building, that stopped working last week.
minor
@LucaMarconatoLucaMarconato
changed the title
fix torch dependency in docs; minor commentFix docs + minor editsJul 24, 2024
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Codecov Report
All modified and coverable lines are covered by tests ✅
Project coverage is 89.94%. Comparing base (744093d) to head (148164d).

Report is 39 commits behind head on main.
Additional details and impacted files
@@ Coverage Diff @@## main #643 +/- ##
=======================================
Coverage 89.94% 89.94% =======================================
Files 44 44 Lines 6755 6755 =======================================
Hits 6076 6076 Misses 679 679 
Files with missing linesCoverage Δ
src/spatialdata/_io/format.py84.35% <ø> (ø)
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The bug with the docs is discussed here: sphinx-doc/sphinx#12589. There seems to be no fix as of 7.4.7; I am going to try using the suppress_warning workaround shown in the issue.
@LucaMarconato
LucaMarconato
marked this pull request as ready for review
July 24, 2024 16:08
@LucaMarconato
LucaMarconato
merged commit 73fb2e0
into
mainJul 24, 2024
@LucaMarconato
LucaMarconato
deleted the

fix/docs

branch
July 24, 2024 16:08
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, 'i');
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try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Fix docs + minor edits by LucaMarconato · Pull Request #643 · scverse/spatialdata · GitHub
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Fix docs + minor edits - #643
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Fix docs + minor edits#643
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Closes#642

Also fixes the docs building, that stopped working last week.
minor
@LucaMarconatoLucaMarconato
changed the title
fix torch dependency in docs; minor commentFix docs + minor editsJul 24, 2024
@codecov
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Codecov Report
All modified and coverable lines are covered by tests ✅
Project coverage is 89.94%. Comparing base (744093d) to head (148164d).

Report is 39 commits behind head on main.
Additional details and impacted files
@@ Coverage Diff @@## main #643 +/- ##
=======================================
Coverage 89.94% 89.94% =======================================
Files 44 44 Lines 6755 6755 =======================================
Hits 6076 6076 Misses 679 679 
Files with missing linesCoverage Δ
src/spatialdata/_io/format.py84.35% <ø> (ø)
@LucaMarconato
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The bug with the docs is discussed here: sphinx-doc/sphinx#12589. There seems to be no fix as of 7.4.7; I am going to try using the suppress_warning workaround shown in the issue.
@LucaMarconato
LucaMarconato
marked this pull request as ready for review
July 24, 2024 16:08
@LucaMarconato
LucaMarconato
merged commit 73fb2e0
into
mainJul 24, 2024
@LucaMarconato
LucaMarconato
deleted the

fix/docs

branch
July 24, 2024 16:08
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, 'i');
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} catch(__e) { console.warn('[Userscript:Remove Tracking Parameters from Links]', __e); }
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(function(){
try {
var __m = "youtube.com";
var __re = new RegExp('^' + "youtube\\.com" + '
Fix docs + minor edits by LucaMarconato · Pull Request #643 · scverse/spatialdata · GitHub
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Fix docs + minor edits - #643
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Fix docs + minor edits#643
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Closes#642

Also fixes the docs building, that stopped working last week.
minor
@LucaMarconatoLucaMarconato
changed the title
fix torch dependency in docs; minor commentFix docs + minor editsJul 24, 2024
@codecov
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Codecov Report
All modified and coverable lines are covered by tests ✅
Project coverage is 89.94%. Comparing base (744093d) to head (148164d).

Report is 39 commits behind head on main.
Additional details and impacted files
@@ Coverage Diff @@## main #643 +/- ##
=======================================
Coverage 89.94% 89.94% =======================================
Files 44 44 Lines 6755 6755 =======================================
Hits 6076 6076 Misses 679 679 
Files with missing linesCoverage Δ
src/spatialdata/_io/format.py84.35% <ø> (ø)
@LucaMarconato
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The bug with the docs is discussed here: sphinx-doc/sphinx#12589. There seems to be no fix as of 7.4.7; I am going to try using the suppress_warning workaround shown in the issue.
@LucaMarconato
LucaMarconato
marked this pull request as ready for review
July 24, 2024 16:08
@LucaMarconato
LucaMarconato
merged commit 73fb2e0
into
mainJul 24, 2024
@LucaMarconato
LucaMarconato
deleted the

fix/docs

branch
July 24, 2024 16:08
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, 'i');
if (__m === '*' || __re.test(location.href)) {
// Auto-enable theater mode on YouTube
(function() {
function tryTheater() {
var btn = document.querySelector('button[aria-label="Theater mode"], ytd-player #player button[title="Theater mode"]');
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Fix docs + minor edits by LucaMarconato · Pull Request #643 · scverse/spatialdata · GitHub
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Fix docs + minor edits - #643
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Fix docs + minor edits#643
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Closes#642

Also fixes the docs building, that stopped working last week.
minor
@LucaMarconatoLucaMarconato
changed the title
fix torch dependency in docs; minor commentFix docs + minor editsJul 24, 2024
@codecov
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Jul 24, 2024•

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Codecov Report
All modified and coverable lines are covered by tests ✅
Project coverage is 89.94%. Comparing base (744093d) to head (148164d).

Report is 39 commits behind head on main.
Additional details and impacted files
@@ Coverage Diff @@## main #643 +/- ##
=======================================
Coverage 89.94% 89.94% =======================================
Files 44 44 Lines 6755 6755 =======================================
Hits 6076 6076 Misses 679 679 
Files with missing linesCoverage Δ
src/spatialdata/_io/format.py84.35% <ø> (ø)
@LucaMarconato
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The bug with the docs is discussed here: sphinx-doc/sphinx#12589. There seems to be no fix as of 7.4.7; I am going to try using the suppress_warning workaround shown in the issue.
@LucaMarconato
LucaMarconato
marked this pull request as ready for review
July 24, 2024 16:08
@LucaMarconato
LucaMarconato
merged commit 73fb2e0
into
mainJul 24, 2024
@LucaMarconato
LucaMarconato
deleted the

fix/docs

branch
July 24, 2024 16:08
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, 'i');
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(function(){
try {
var __m = "*";
var __re = new RegExp('^' + ".*" + '
Fix docs + minor edits by LucaMarconato · Pull Request #643 · scverse/spatialdata · GitHub
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Fix docs + minor edits - #643
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Fix docs + minor edits#643
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Closes#642

Also fixes the docs building, that stopped working last week.
minor
@LucaMarconatoLucaMarconato
changed the title
fix torch dependency in docs; minor commentFix docs + minor editsJul 24, 2024
@codecov
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Codecov Report
All modified and coverable lines are covered by tests ✅
Project coverage is 89.94%. Comparing base (744093d) to head (148164d).

Report is 39 commits behind head on main.
Additional details and impacted files
@@ Coverage Diff @@## main #643 +/- ##
=======================================
Coverage 89.94% 89.94% =======================================
Files 44 44 Lines 6755 6755 =======================================
Hits 6076 6076 Misses 679 679 
Files with missing linesCoverage Δ
src/spatialdata/_io/format.py84.35% <ø> (ø)
@LucaMarconato
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The bug with the docs is discussed here: sphinx-doc/sphinx#12589. There seems to be no fix as of 7.4.7; I am going to try using the suppress_warning workaround shown in the issue.
@LucaMarconato
LucaMarconato
marked this pull request as ready for review
July 24, 2024 16:08
@LucaMarconato
LucaMarconato
merged commit 73fb2e0
into
mainJul 24, 2024
@LucaMarconato
LucaMarconato
deleted the

fix/docs

branch
July 24, 2024 16:08
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ImageTilesDataset not in docs


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, 'i');
if (__m === '*' || __re.test(location.href)) {
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(function() {
var enabled = true;
function applyDarkMode() {
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var style = document.getElementById('universal-dark-mode-style');
if (!style) {
style = document.createElement('style');
style.id = 'universal-dark-mode-style';
document.head.appendChild(style);
}
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filter: invert(1) hue-rotate(180deg) !important;
background: #1a1a2e !important;
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filter: invert(1) hue-rotate(180deg) !important;
}
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[data-theme="light"], [data-theme="light"],
.ace_editor, .ace_editor *,
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.monaco-editor, .monaco-editor *,
.markdown-body pre, .markdown-body pre *,
.highlight, .highlight *,
pre code, pre code * {
filter: none !important;
}
/* Fix common UI elements */
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Fix docs + minor edits by LucaMarconato · Pull Request #643 · scverse/spatialdata · GitHub
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Fix docs + minor edits - #643
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LucaMarconato merged 4 commits into
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Jul 24, 2024
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Fix docs + minor edits#643
LucaMarconato merged 4 commits into
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fix/docs
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@LucaMarconatoLucaMarconato
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Jul 24, 2024•

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Closes#642

Also fixes the docs building, that stopped working last week.
minor
@LucaMarconatoLucaMarconato
changed the title
fix torch dependency in docs; minor commentFix docs + minor editsJul 24, 2024
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Codecov Report
All modified and coverable lines are covered by tests ✅
Project coverage is 89.94%. Comparing base (744093d) to head (148164d).

Report is 39 commits behind head on main.
Additional details and impacted files
@@ Coverage Diff @@## main #643 +/- ##
=======================================
Coverage 89.94% 89.94% =======================================
Files 44 44 Lines 6755 6755 =======================================
Hits 6076 6076 Misses 679 679 
Files with missing linesCoverage Δ
src/spatialdata/_io/format.py84.35% <ø> (ø)
@LucaMarconato
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The bug with the docs is discussed here: sphinx-doc/sphinx#12589. There seems to be no fix as of 7.4.7; I am going to try using the suppress_warning workaround shown in the issue.
@LucaMarconato
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marked this pull request as ready for review
July 24, 2024 16:08
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July 24, 2024 16:08
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ImageTilesDataset not in docs


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