Snakemake

The uncompromising Snakemake code formatter

A Snakemake software deployment plugin for using conda packages. Implemented using py-rattler.

An introductory Course for Software Provenance using the Snakemake Nanopub Reporter Plugin

This is the development home of the Snakemake wrapper repository, see

This is the development home of the workflow management system Snakemake. For general information, see

A software deployment plugin to translate Conda specs to Spack

A stable interface for Snakemake software deployment plugins

A Snakemake executor plugin for submitting jobs to a SLURM cluster

Snakemake Report Plugin to automatically create Nanopubs after workflow runs holding all metadata of that workflow