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PHOENIX-5296 : Ensure store file reader refcount is zero at end of relevant unit tests - #1096

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PHOENIX-5296 : Ensure store file reader refcount is zero at end of relevant unit tests#1096
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💔 -1 overall

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@virajjasani

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@stoty could you please take a look while we have 2nd QA results coming up?
Thanks

thread.setDaemon(true);
thread.start();
}

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Please move this to CompatUtil, the HbaseCompatCapabilities is for bool flags only.

*
* @throws IOException if refCount is leaked
*/
protected synchronized static void confirmStoreRefCountLeak()

@stotystotyJan 18, 2021

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I think that throwing an exception here may interfere with the cluster shutdown logic that this is called from.

Either catch and log it (and fail the test), or make sure that it doesn't preclude cluster shutdown at every invocation point.

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I think better catch and log it and also throw AssertionError with explanation.

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Throwing any exception would also stop the minicluster shutdown process, unless you catch it at the caller.

We should make sure that shutdownMiniCluster() will get called even if confirmStoreRefCountLeak() fails.

@AfterClass
public static void shutdown() {
confirmStoreRefCountLeak();
shutdownMiniCluster();
}

@virajjasanivirajjasaniJan 18, 2021

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Updated PR should work. It does free up resources including shutting down mini or distributed cluster as per freeResources().

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Let me update 4.x PR in the meanwhile.

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💔 -1 overall

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@stotystoty left a comment

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Maybe I'm being paranoiud, the given the amount of trouble miniCluster shutdown/startup has already caused for it, I'd like to make sure that we do not skip it anywhere.
(I didn't comment on each file, but we have quite a lot of them).

CompatUtil.confirmStoreRefCountLeak(UTIL.getAdmin());
} catch (IOException e) {
LOGGER.error("StoreFile refCount is leaked", e);
UTIL.shutdownMiniHBaseCluster();

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Should just put these statements into a finally instead.

hbaseTestUtil.getAdmin());
} catch (IOException e) {
LOGGER.error("StoreFile refCount is leaked", e);
try {

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this can also go into finally.

tableName=null;
public void cleanUp() throws Exception {
confirmStoreRefCountLeak();
tableName = null;

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switch the statement order ?

public void cleanUp() throws SQLException {
public void cleanUp() throws Exception {
confirmStoreRefCountLeak();
deleteTenantData(descViewName);

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The should probably go into a finally as well.

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This too should be taken care of by BaseTest#confirmStoreRefCountLeak() because it internally frees up resources and while doing so, drops all tables before shutting down cluster.

@AfterClass
public static synchronized void teardown() {
public static synchronized void teardown() throws Exception {
confirmStoreRefCountLeak();

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this should also be

try {
confirmStore...
} catch (Exception e) {
Assert.fail()}
} finally {
tearDownMiniCluster...
}

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Oh btw we don't need to worry about putting anything in finally after calling BaseTest#confirmStoreRefCountLeak() because BaseTest is taking care of shutting down miniCluster:

 protected synchronized static void confirmStoreRefCountLeak()
throws Exception {
if (getUtility() != null) {
try {
CompatUtil.confirmStoreRefCountLeak(
getUtility().getAdmin());
} catch (IOException e) {
LOGGER.error("StoreFile refCount is leaked", e);
freeResources(false);
fail("StoreFile refCount is leaked");
}
}
}

freeResources() is doing the job.

@virajjasani

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given the amount of trouble miniCluster shutdown/startup has already caused for it, I'd like to make sure that we do not skip it anywhere.

Definitely good point. Let me take a pass through all tests.
Thanks

CompatUtil.confirmStoreRefCountLeak(
getUtility().getAdmin());
} catch (IOException e) {
LOGGER.error("StoreFile refCount is leaked", e);

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This is a rather unexpected side effect. I am not a fan of having the freeResources logic called from a different place in the normal and the error path.

Maybe call this method freeResourcesAndCheckRefCountLeak, and
call freeResources unconditionally from from finally here ?

@virajjasanivirajjasaniJan 18, 2021

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Okk I think we better let cluster shutdown happen the way it does today. We better use finally with catching storeFile refCount leak assertion catch so that not only we fail test but also let resources be freed up in individual test's finally block. I was thinking of taking care of cluster shutdown in BaseTest only as generic check, but now it seems better let individual test decide what they want to free up - cluster or just drop table or anything as per it's current behaviour.
The only problem with current approach (generic freeup resource in BaseTest) is that if refCount leakage is encountered in one test and if we shutdown miniCluster in @After, other tests in that class will not run anyways.

@stoty you are also fine with having finally in each test right?

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Sounds good, @virajjasani

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💔 -1 overall

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💔 -1 overall

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💔 -1 overall

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_ Other Tests _
-1 ❌unit0m 36sroot in the patch failed.
+1 💚asflicense1m 8sThe patch does not generate ASF License warnings.
53m 57s
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/5/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile
unameLinux ad091ddfbce4 4.15.0-65-generic #74-Ubuntu SMP Tue Sep 17 17:06:04 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
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versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec0m 30sDocker mode activated.
_ Prechecks _
+1 💚dupname0m 0sNo case conflicting files found.
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_ Other Tests _
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181m 22s
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/7/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile xml
unameLinux 18deb9cb44c9 4.15.0-58-generic #64-Ubuntu SMP Tue Aug 6 11:12:41 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec0m 30sDocker mode activated.
_ Prechecks _
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179m 21s
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/8/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile xml
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versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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LGTM.
This is certain not to disrupt the control flow.

@virajjasani

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Let me resolve the conflicts

@virajjasani

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Build is timing out, not sure if relevant.

@stoty

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Yout may want to rebase these on HEAD, in case the Xmx setting is the culprit.

@virajjasani

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Let me also upload patch over Jira in the meanwhile.

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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec0m 45sDocker mode activated.
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_ Other Tests _
-1 ❌unit142m 19sroot in the patch failed.
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233m 15s
ReasonTests
Failed junit testsphoenix.end2end.PermissionsCacheIT
phoenix.end2end.PermissionNSEnabledIT
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/13/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile xml
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Max. process+thread count6267 (vs. ulimit of 30000)
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versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec0m 31sDocker mode activated.
_ Prechecks _
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_ Patch Compile Tests _
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_ Other Tests _
-1 ❌unit127m 38sroot in the patch failed.
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194m 28s
ReasonTests
Failed junit testsphoenix.end2end.IndexScrutinyToolIT
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/14/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile xml
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Max. process+thread count13647 (vs. ulimit of 30000)
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versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec0m 33sDocker mode activated.
_ Prechecks _
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_ Patch Compile Tests _
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-1 ❌checkstyle0m 41sroot: The patch generated 17 new + 124 unchanged - 2 fixed = 141 total (was 126)
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_ Other Tests _
-1 ❌unit113m 10sroot in the patch failed.
+1 💚asflicense3m 7sThe patch does not generate ASF License warnings.
180m 21s
ReasonTests
Failed junit testsphoenix.end2end.PermissionNSEnabledWithCustomAccessControllerIT
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/15/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile xml
unameLinux 921734e0bb6f 4.15.0-58-generic #64-Ubuntu SMP Tue Aug 6 11:12:41 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Build toolmaven
Personalitydev/phoenix-personality.sh
git revisionmaster / 772ff2c
Default JavaPrivate Build-1.8.0_242-8u242-b08-0ubuntu3~16.04-b08
checkstylehttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/15/artifact/yetus-general-check/output/diff-checkstyle-root.txt
unithttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/15/artifact/yetus-general-check/output/patch-unit-root.txt
Test Resultshttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/15/testReport/
Max. process+thread count5262 (vs. ulimit of 30000)
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Console outputhttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/15/console
versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec1m 31sDocker mode activated.
_ Prechecks _
+1 💚dupname0m 0sNo case conflicting files found.
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_ master Compile Tests _
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_ Patch Compile Tests _
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_ Other Tests _
-1 ❌unit130m 31sroot in the patch failed.
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206m 17s
ReasonTests
Failed junit testsphoenix.end2end.IndexScrutinyToolIT
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/17/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile xml
unameLinux b61b7e5f96ef 4.15.0-101-generic #102-Ubuntu SMP Mon May 11 10:07:26 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
Build toolmaven
Personalitydev/phoenix-personality.sh
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Test Resultshttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/17/testReport/
Max. process+thread count5808 (vs. ulimit of 30000)
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Console outputhttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/17/console
versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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💔 -1 overall

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+0 🆗reexec0m 0sDocker mode activated.
-1 ❌patch0m 3s#1096 does not apply to master. Rebase required? Wrong Branch? See https://yetus.apache.org/documentation/in-progress/precommit-patchnames for help.
SubsystemReport/Notes
GITHUB PR#1096
Console outputhttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/18/console
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💔 -1 overall

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+0 🆗reexec2m 39sDocker mode activated.
_ Prechecks _
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_ master Compile Tests _
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_ Other Tests _
-1 ❌unit109m 5sroot in the patch failed.
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194m 9s
ReasonTests
Failed junit testsphoenix.end2end.index.IndexMetadataIT
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/19/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile xml
unameLinux 156716bd3d6b 4.15.0-101-generic #102-Ubuntu SMP Mon May 11 10:07:26 UTC 2020 x86_64 x86_64 x86_64 GNU/Linux
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Test Resultshttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/19/testReport/
Max. process+thread count10036 (vs. ulimit of 30000)
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Console outputhttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/19/console
versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec1m 5sDocker mode activated.
_ Prechecks _
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_ Patch Compile Tests _
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_ Other Tests _
-1 ❌unit106m 28sroot in the patch failed.
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174m 33s
ReasonTests
Failed junit testsphoenix.end2end.UpsertSelectIT
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/20/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile xml
unameLinux e66790ac296b 4.15.0-65-generic #74-Ubuntu SMP Tue Sep 17 17:06:04 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
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Max. process+thread count10814 (vs. ulimit of 30000)
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versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec1m 9sDocker mode activated.
_ Prechecks _
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_ Other Tests _
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189m 38s
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/23/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile xml
unameLinux 81edc6f2ae73 4.15.0-65-generic #74-Ubuntu SMP Tue Sep 17 17:06:04 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
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Test Resultshttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/23/testReport/
Max. process+thread count9821 (vs. ulimit of 30000)
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versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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VoteSubsystemRuntimeComment
+0 🆗reexec0m 33sDocker mode activated.
_ Prechecks _
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_ Other Tests _
-1 ❌unit232m 31sroot in the patch failed.
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296m 28s
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/24/artifact/yetus-general-check/output/Dockerfile
GITHUB PR#1096
Optional Testsdupname asflicense javac javadoc unit spotbugs hbaserebuild hbaseanti checkstyle compile xml
unameLinux fc421217da95 4.15.0-58-generic #64-Ubuntu SMP Tue Aug 6 11:12:41 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
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Personalitydev/phoenix-personality.sh
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Test Resultshttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/24/testReport/
Max. process+thread count13599 (vs. ulimit of 30000)
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Console outputhttps://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/24/console
versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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@virajjasani

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@stoty last 2 builds have phoenix-core built successfully (as both runs took place after PHOENIX-6329 was checked-in).

@virajjasani

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@stoty i have done small change in CompatUtil to ensure tests have enough time before we fail with refCount leak. Could you please take a look again?

Comment threadphoenix-hbase-compat-2.3.0/pom.xml Outdated
<version>${slf4j.version}</version>
<scope>provided</scope>
</dependency>
<dependency>

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Could you solve this without Guava ?
I know that it doesn't really matter, but it pains me to see anther Guava dependency added.

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For 4.x Uninterruptibles is in beta version based on guava version that we use so i used this: https://github.com/apache/phoenix/pull/1097/files#diff-d12329d4796498b9880a54bb4b6d681f7ee42b924536bf5247791f372329cd9fR61
However, i feel using Uninterruptibles.sleepUninterruptibly more comfortably as we don't have to catch InterruptedException and it is not interruptible. But i agree with your point on not introducing more dependency so let me replicate same logic as 4.x.

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Done

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💔 -1 overall

VoteSubsystemRuntimeComment
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224m 9s
ReasonTests
FindBugsmodule:phoenix-hbase-compat-2.4.0
org.apache.phoenix.compat.hbase.CompatUtil.isAnyStoreRefCountLeaked(Admin) calls Thread.sleep() with a lock held At CompatUtil.java:lock held At CompatUtil.java:[line 109]
FindBugsmodule:phoenix-hbase-compat-2.3.0
org.apache.phoenix.compat.hbase.CompatUtil.isAnyStoreRefCountLeaked(Admin) calls Thread.sleep() with a lock held At CompatUtil.java:lock held At CompatUtil.java:[line 108]
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versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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@virajjasani

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@stoty Thanks for the suggestion, i have updated PR for hbase-compat modules to get rid of guava dependency. Any other suggestions you have in mind?

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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec1m 14sDocker mode activated.
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FindBugsmodule:phoenix-hbase-compat-2.4.0
org.apache.phoenix.compat.hbase.CompatUtil.isAnyStoreRefCountLeaked(Admin) calls Thread.sleep() with a lock held At CompatUtil.java:lock held At CompatUtil.java:[line 109]
FindBugsmodule:phoenix-hbase-compat-2.3.0
org.apache.phoenix.compat.hbase.CompatUtil.isAnyStoreRefCountLeaked(Admin) calls Thread.sleep() with a lock held At CompatUtil.java:lock held At CompatUtil.java:[line 108]
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versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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@stoty

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One more nit: Please update the commit message to match the JIRA description.

@virajjasanivirajjasani changed the title PHOENIX-5296 : refCount leak checksPHOENIX-5296 : Ensure store file reader refcount is zero at end of relevant unit testsJan 26, 2021
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💔 -1 overall

VoteSubsystemRuntimeComment
+0 🆗reexec1m 9sDocker mode activated.
_ Prechecks _
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_ Other Tests _
-1 ❌unit118m 36sroot in the patch failed.
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181m 49s
ReasonTests
FindBugsmodule:phoenix-hbase-compat-2.4.0
org.apache.phoenix.compat.hbase.CompatUtil.isAnyStoreRefCountLeaked(Admin) calls Thread.sleep() with a lock held At CompatUtil.java:lock held At CompatUtil.java:[line 109]
FindBugsmodule:phoenix-hbase-compat-2.3.0
org.apache.phoenix.compat.hbase.CompatUtil.isAnyStoreRefCountLeaked(Admin) calls Thread.sleep() with a lock held At CompatUtil.java:lock held At CompatUtil.java:[line 108]
SubsystemReport/Notes
DockerClientAPI=1.41 ServerAPI=1.41 base: https://ci-hadoop.apache.org/job/Phoenix/job/Phoenix-PreCommit-GitHub-PR/job/PR-1096/27/artifact/yetus-general-check/output/Dockerfile
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versionsgit=2.7.4 maven=3.3.9 spotbugs=4.1.3
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@stoty

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Committed with update commit message.

@stotystoty closed this Jan 27, 2021
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@virajjasani@stoty