ARROW-16703: [R] Refactor map_batches() so it can stream results

[paleolimbot]

No description provided.

[github-actions]

https://issues.apache.org/jira/browse/ARROW-16703

[github-actions]

⚠️ Ticket has not been started in JIRA, please click 'Start Progress'.

[paleolimbot]

@wjones127 I'd love your review on this when you have a chance!

A note that I'm going to keep this as a draft until #13397/ARROW-16444 is merged because after it is we can pass this type of record batch reader directly into the query engine (i.e., the awkward (function(x) x$read_table()) additions in this PR can disappear because we'll be running most queries with the required event loop for SafeCallIntoR() to work.

[wjones127]

I think as_record_batch_reader.function is so cool! 😍 As a follow-up, we should add an example to the datasets vignette. It seems like it might be useful to show how to use it to generate a larger-than-memory simulated dataset.

[wjones127]

Would collect() not work here?

[paleolimbot]

It doesn't right now because the requisite RunWithCapturedR() isn't there yet (it gets added here: https://github.com/apache/arrow/pull/13397/files#diff-0d1ff6f17f571f6a348848af7de9c05ed588d3339f46dd3bcf2808489f7dca92R132-R144 )

Details

library(arrow, warn.conflicts=FALSE)
#> Some features are not enabled in this build of Arrow. Run `arrow_info()` for more information.source_reader<-RecordBatchReader$create(
batches=list(
as_record_batch(mtcars[1:10, ]),
as_record_batch(mtcars[11:20, ]),
as_record_batch(mtcars[21:nrow(mtcars), ])
)
)
reader<-source_reader|> map_batches(~rbind(as.data.frame(.), as.data.frame(.))) dplyr::collect(reader)
#> Error in `dplyr::collect()` at r/R/dplyr-collect.R:43:48:#> ! NotImplemented: Call to R from a non-R thread without calling RunWithCapturedR#> /Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/record_batch.h:242 ReadNext(&batch)#> /Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/util/iterator.h:428 it_.Next()#> /Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/compute/exec/exec_plan.cc:559 iterator_.Next()#> /Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/record_batch.cc:337 ReadNext(&batch)#> /Users/deweydunnington/Desktop/rscratch/arrow/cpp/src/arrow/record_batch.cc:351 ToRecordBatches()

^{Created on 2022-07-19 by the reprex package (v2.0.1)}

[wjones127]

Ah right I should have read your earlier comment to completion. Thanks for explaining!

[wjones127]

We should probably add a test to make sure the dots are being passed through.

[paleolimbot]

That was a really good catch (it needed to be c(list(batch), dots))!

[paleolimbot]

@wjones127 any thoughts on whether or not this is too large of a change to merge? I don't know how many users we have of map_batches()...this does restrict what one can do with the result of map_batches() (for example, an exec plan that ends with head() won't work). One option is to add a lazy = TRUE|FALSE argument to allow the streaming behaviour but default to non-streaming like we did before.

[wjones127]

any thoughts on whether or not this is too large of a change to merge? I don't know how many users we have of map_batches()...this does restrict what one can do with the result of map_batches() (for example, an exec plan that ends with head() won't work). One option is to add a lazy = TRUE|FALSE argument to allow the streaming behaviour but default to non-streaming like we did before.

On one hand we do mark this as experimental, so I'm no super worried about breaking it right now. But also I find "an exec plan that ends with head() won't work" alarming. Why wouldn't that work?

[paleolimbot]

It is a bit alarming...it's because some exec plans that end in head() rely on an R-level RecordBatchReader where the ExecPlan is executing stuff in the background. The user-defined functions PR only works when we evaluate the whole plan into a table (so that we can guarantee all the R function calls have happened before we hop out of the event loop). I have ARROW-17178 for the follow-up to fix it, but it sounds like it would be best to add a lazy argument with a default that mirrors the current behaviour so that users can opt-in to the even more experimental behaviour.

[wjones127]

Okay that’s less alarming than I thought. Let’s add that extra param then; it sounds like the best solution for now. Hopefully we can make a goal to stabilize and document in the next version though; we’ve been messing with it for a while.

[ursabot]

Benchmark runs are scheduled for baseline = ee2e944 and contender = 70904df. 70904df is a master commit associated with this PR. Results will be available as each benchmark for each run completes.
Conbench compare runs links:
[Failed ⬇️0.0% ⬆️0.0%] ec2-t3-xlarge-us-east-2
[Failed ⬇️1.57% ⬆️0.07%] test-mac-arm
[Failed ⬇️0.54% ⬆️0.0%] ursa-i9-9960x
[Finished ⬇️0.86% ⬆️0.11%] ursa-thinkcentre-m75q
Buildkite builds:
[Failed] 70904dff ec2-t3-xlarge-us-east-2
[Failed] 70904dff test-mac-arm
[Failed] 70904dff ursa-i9-9960x
[Finished] 70904dff ursa-thinkcentre-m75q
[Failed] ee2e9448 ec2-t3-xlarge-us-east-2
[Finished] ee2e9448 test-mac-arm
[Finished] ee2e9448 ursa-i9-9960x
[Finished] ee2e9448 ursa-thinkcentre-m75q
Supported benchmarks:
ec2-t3-xlarge-us-east-2: Supported benchmark langs: Python, R. Runs only benchmarks with cloud = True
test-mac-arm: Supported benchmark langs: C++, Python, R
ursa-i9-9960x: Supported benchmark langs: Python, R, JavaScript
ursa-thinkcentre-m75q: Supported benchmark langs: C++, Java